Sodium in PDB 6mpy: B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide

All present enzymatic activity of B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide:
1.11.1.21;

The structure of B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide, PDB code: 6mpy was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.91 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	100.910, 115.790, 175.010, 90.00, 90.00, 90.00
R / Rfree (%)	15.1 / 18.4

The structure of B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide (pdb code 6mpy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide, PDB code: 6mpy:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide within 5.0Å range: probe atom residue distance (Å) B Occ A:Na802 b:18.2 occ:1.00 O A:GLY124 2.3 18.0 1.0 O A:HOH1239 2.3 21.3 1.0 O A:SER494 2.3 18.4 1.0 O A:GLY122 2.3 18.5 1.0 O A:HOH1075 2.4 19.8 1.0 C A:SER494 3.2 18.0 1.0 C A:GLY124 3.5 16.5 1.0 C A:GLY122 3.5 18.1 1.0 CA A:ARG123 3.6 18.6 1.0 C A:ARG123 3.6 17.7 1.0 N A:GLY124 3.6 16.8 1.0 O A:HOH1176 3.9 26.0 1.0 CA A:SER494 4.0 17.6 1.0 O A:HOH1341 4.0 21.7 1.0 OD2 A:ASP427 4.0 17.1 1.0 N A:ARG123 4.0 18.0 1.0 N A:ASP495 4.1 18.9 1.0 CB A:ASP427 4.1 18.9 1.0 CA A:GLY124 4.2 18.0 1.0 CB A:SER494 4.2 18.4 1.0 O A:ARG123 4.2 16.1 1.0 CA A:ASP495 4.4 18.6 1.0 CB A:ASP495 4.6 18.7 1.0 CG A:ASP427 4.6 19.5 1.0 N A:GLY125 4.6 15.8 1.0 CD1 A:TYR117 4.7 18.9 1.0 CA A:GLY122 4.8 18.8 1.0 OE2 A:GLU198 4.8 53.1 1.0 OE1 A:GLU198 4.9 31.3 1.0 CB A:ARG123 4.9 18.4 1.0 CE1 A:TYR117 4.9 18.3 1.0 CA A:GLY125 5.0 15.5 1.0

Sodium binding site 2 out of 2 in the B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of B. Pseudomallei Katg Crystallized in the Presence of Benzoyl Hydrazide within 5.0Å range: probe atom residue distance (Å) B Occ B:Na802 b:17.8 occ:1.00 O B:GLY122 2.3 17.3 1.0 O B:SER494 2.3 18.1 1.0 O B:GLY124 2.3 16.6 1.0 O B:HOH1012 2.3 21.5 1.0 O B:HOH1067 2.5 24.1 1.0 C B:SER494 3.2 18.7 1.0 C B:GLY122 3.5 17.5 1.0 C B:GLY124 3.5 16.9 1.0 CA B:ARG123 3.6 17.0 1.0 C B:ARG123 3.6 17.2 1.0 N B:GLY124 3.6 16.1 1.0 CA B:SER494 3.9 17.2 1.0 N B:ARG123 4.0 16.8 1.0 O B:HOH1432 4.0 20.6 1.0 OD2 B:ASP427 4.0 20.2 1.0 N B:ASP495 4.1 18.6 1.0 O B:HOH1026 4.1 30.1 1.0 CB B:SER494 4.1 17.9 1.0 CB B:ASP427 4.1 21.0 1.0 CA B:GLY124 4.2 16.5 1.0 O B:ARG123 4.2 17.9 1.0 CA B:ASP495 4.4 17.6 1.0 CB B:ASP495 4.6 17.6 1.0 OE2 B:GLU198 4.6 43.4 1.0 CD1 B:TYR117 4.6 19.0 1.0 CG B:ASP427 4.6 20.6 1.0 N B:GLY125 4.7 17.4 1.0 CA B:GLY122 4.7 17.8 1.0 OE2 B:GLU128 4.8 31.5 1.0 CE1 B:TYR117 4.8 18.8 1.0 CB B:ARG123 4.9 16.8 1.0 OG B:SER494 4.9 17.2 1.0 CA B:GLY125 5.0 17.0 1.0

P.C.Loewen, P.C.Loewen. N/A N/A.