Sodium in PDB 6mec: Structure of A Group II Intron Retroelement After Dna Integration

Other elements in 6mec:

The structure of Structure of A Group II Intron Retroelement After Dna Integration also contains other interesting chemical elements:

Magnesium (Mg) 51 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of A Group II Intron Retroelement After Dna Integration (pdb code 6mec). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Group II Intron Retroelement After Dna Integration, PDB code: 6mec:

Sodium binding site 1 out of 1 in 6mec

Go back to Sodium Binding Sites List in 6mec
Sodium binding site 1 out of 1 in the Structure of A Group II Intron Retroelement After Dna Integration


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Group II Intron Retroelement After Dna Integration within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na951

b:74.7
occ:1.00
O6 A:G395 2.5 92.9 1.0
N4 A:C19 2.6 88.9 1.0
O6 A:G394 2.6 87.6 1.0
N4 A:C20 3.1 92.0 1.0
C6 A:G395 3.6 92.9 1.0
C6 A:G394 3.7 87.6 1.0
C4 A:C19 3.8 88.9 1.0
C4 A:C20 4.2 92.0 1.0
O4 A:U393 4.2 80.7 1.0
N1 A:G395 4.3 92.9 1.0
N3 A:C19 4.4 88.9 1.0
N6 A:A21 4.5 89.0 1.0
N1 A:G394 4.5 87.6 1.0
C5 A:G394 4.6 87.6 1.0
C5 A:G395 4.7 92.9 1.0
N3 A:C20 4.7 92.0 1.0
C5 A:C19 4.7 88.9 1.0
N7 A:G394 4.9 87.6 1.0
O4 A:U396 4.9 91.3 1.0

Reference:

D.B.Haack, X.Yan, C.Zhang, J.Hingey, D.Lyumkis, T.S.Baker, N.Toor. Cryo-Em Structures of A Group II Intron Reverse Splicing Into Dna. Cell V. 178 612 2019.
ISSN: ISSN 1097-4172
PubMed: 31348888
DOI: 10.1016/J.CELL.2019.06.035
Page generated: Tue Dec 15 12:35:27 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy