Sodium in PDB 6mec: Structure of A Group II Intron Retroelement After Dna Integration

The structure of Structure of A Group II Intron Retroelement After Dna Integration also contains other interesting chemical elements:

Magnesium

(Mg)

51 atoms

The binding sites of Sodium atom in the Structure of A Group II Intron Retroelement After Dna Integration (pdb code 6mec). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Group II Intron Retroelement After Dna Integration, PDB code: 6mec:

Sodium binding site 1 out of 1 in the Structure of A Group II Intron Retroelement After Dna Integration


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Group II Intron Retroelement After Dna Integration within 5.0Å range: probe atom residue distance (Å) B Occ A:Na951 b:74.7 occ:1.00 O6 A:G395 2.5 92.9 1.0 N4 A:C19 2.6 88.9 1.0 O6 A:G394 2.6 87.6 1.0 N4 A:C20 3.1 92.0 1.0 C6 A:G395 3.6 92.9 1.0 C6 A:G394 3.7 87.6 1.0 C4 A:C19 3.8 88.9 1.0 C4 A:C20 4.2 92.0 1.0 O4 A:U393 4.2 80.7 1.0 N1 A:G395 4.3 92.9 1.0 N3 A:C19 4.4 88.9 1.0 N6 A:A21 4.5 89.0 1.0 N1 A:G394 4.5 87.6 1.0 C5 A:G394 4.6 87.6 1.0 C5 A:G395 4.7 92.9 1.0 N3 A:C20 4.7 92.0 1.0 C5 A:C19 4.7 88.9 1.0 N7 A:G394 4.9 87.6 1.0 O4 A:U396 4.9 91.3 1.0

D.B.Haack, X.Yan, C.Zhang, J.Hingey, D.Lyumkis, T.S.Baker, N.Toor. Cryo-Em Structures of A Group II Intron Reverse Splicing Into Dna. Cell V. 178 612 2019.
ISSN: ISSN 1097-4172
PubMed: 31348888
DOI: 10.1016/J.CELL.2019.06.035