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Sodium in PDB 6lzb: Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06

Enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06

All present enzymatic activity of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06:
3.4.11.18;

Protein crystallography data

The structure of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06, PDB code: 6lzb was solved by C.B.Sandeep, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.53 / 1.29
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.573, 77.251, 48.623, 90, 91.54, 90
R / Rfree (%) 16.3 / 20

Other elements in 6lzb:

The structure of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 also contains other interesting chemical elements:

Cobalt (Co) 2 atoms
Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 (pdb code 6lzb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06, PDB code: 6lzb:

Sodium binding site 1 out of 1 in 6lzb

Go back to Sodium Binding Sites List in 6lzb
Sodium binding site 1 out of 1 in the Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na407

b:19.9
occ:1.00
 O A:VAL209 2.2 18.2 1.0
O A:SER363 2.3 19.9 1.0
O A:HOH588 2.3 21.4 1.0
O A:ASN207 2.3 22.0 1.0
O A:HOH663 3.1 21.4 1.0
C A:ASN207 3.3 21.4 1.0
C A:SER363 3.4 17.3 1.0
C A:VAL209 3.4 15.5 1.0
N A:ASN207 3.6 21.8 1.0
C A:VAL206 3.9 17.4 1.0
CA A:ASN207 3.9 20.8 1.0
N A:VAL209 4.0 18.0 1.0
N A:SER363 4.0 20.7 1.0
CA A:SER363 4.0 18.9 1.0
O A:SER205 4.0 16.0 1.0
O A:VAL206 4.1 19.8 1.0
O A:HOH561 4.2 17.9 1.0
CB A:SER363 4.2 21.1 1.0
CA A:VAL209 4.2 16.6 1.0
N A:GLU208 4.4 20.9 1.0
C A:SER205 4.4 15.2 1.0
N A:ALA364 4.4 17.4 1.0
N A:ILE210 4.4 16.2 1.0
C A:GLU208 4.4 15.7 1.0
CD1 A:ILE225 4.5 24.6 1.0
CA A:ILE210 4.7 16.9 1.0
CA A:ALA364 4.7 15.1 1.0
CB A:SER205 4.7 13.9 1.0
CG1 A:ILE225 4.7 21.5 1.0
N A:VAL206 4.7 18.0 1.0
CA A:VAL206 4.7 19.0 1.0
CB A:VAL209 4.7 17.3 1.0
CA A:GLU208 4.8 22.6 1.0
O A:ILE210 4.9 15.7 1.0
OG A:SER363 4.9 20.4 1.0

Reference:

C.B.Sandeep, A.Addlagatta. Crystal Structure of Human Methionine Aminopeptidase (HSMETAP1B) in Complex with An-P2-5H-06 To Be Published.
Page generated: Tue Oct 8 11:46:27 2024

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