Sodium in PDB 6lfw: Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126

The structure of Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126, PDB code: 6lfw was solved by T.Nakamura, Y.Yamagata, H.Morioka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.60 / 1.41
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	92.210, 92.210, 51.550, 90.00, 90.00, 90.00
R / Rfree (%)	12.6 / 15.6

The structure of Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126 also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Sodium atom in the Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126 (pdb code 6lfw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126, PDB code: 6lfw:

Sodium binding site 1 out of 1 in the Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:60.0 occ:1.00 OE1 A:GLU106 2.4 34.0 1.0 O A:HOH428 2.5 65.5 1.0 OG A:SER13 3.4 21.5 0.4 O A:HOH588 3.4 53.0 1.0 CD A:GLU106 3.5 29.1 1.0 O A:HOH444 3.7 18.4 1.0 CB A:GLU106 3.9 19.9 1.0 O A:HOH606 4.0 45.8 1.0 CG A:GLU106 4.3 24.1 1.0 OE2 A:GLU106 4.3 31.3 1.0 CB A:SER13 4.4 15.2 0.6 OG A:SER13 4.5 17.1 0.6 CB A:SER13 4.6 18.5 0.4 O A:HOH471 4.8 19.4 1.0

T.Nakamura, H.Morioka. Crystal Structure of PCB4SCFV(HN56D) in Complex with Pcb#126 To Be Published.