Sodium in PDB 6l19: The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae

The structure of The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae, PDB code: 6l19 was solved by L.Wang, Y.Chen, W.Liu, J.Lan, F.Shang, Y.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.23 / 2.13
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	128.915, 128.915, 56.277, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 22.1

The structure of The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae (pdb code 6l19). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae, PDB code: 6l19:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:42.7 occ:1.00 N A:ALA112 2.9 27.0 1.0 O A:HOH334 3.4 37.6 1.0 CB A:ALA112 3.6 31.0 1.0 O A:GLY110 3.6 22.2 1.0 CA A:ALA112 3.7 30.4 1.0 C A:TYR111 3.8 22.9 1.0 CA A:TYR111 3.8 25.9 1.0 N A:GLY113 4.2 35.3 1.0 C A:GLY110 4.4 25.4 1.0 C A:ALA112 4.5 33.6 1.0 N A:TYR111 4.6 26.6 1.0 CA A:CYS36 4.6 37.3 1.0 O A:HOH365 4.7 42.7 1.0 O A:CYS36 4.8 28.4 1.0 O A:TYR111 4.9 28.4 1.0 CB A:TYR111 5.0 26.0 1.0 OE1 A:GLU115 5.0 67.6 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:53.2 occ:1.00 SG B:CYS147 2.6 39.5 0.6 O B:HOH381 3.4 40.2 1.0 SG B:CYS147 3.6 34.9 0.5 CB B:CYS147 3.7 31.2 0.6 O B:HOH335 3.8 38.6 1.0 CB B:CYS147 3.9 31.4 0.5 C B:CYS147 4.0 27.4 0.5 CG B:GLN148 4.0 40.1 1.0 C B:CYS147 4.0 27.4 0.6 N B:GLN148 4.0 20.0 1.0 O A:HOH348 4.0 51.5 1.0 O B:CYS147 4.1 26.3 0.5 O B:CYS147 4.2 26.2 0.6 CA B:GLN148 4.2 28.9 1.0 CG2 B:VAL151 4.2 25.4 1.0 CD B:GLN148 4.3 58.6 1.0 O B:HOH378 4.3 43.4 1.0 O B:HOH339 4.3 28.7 1.0 NE2 B:GLN148 4.4 63.9 1.0 CA B:CYS147 4.5 29.2 0.6 CA B:CYS147 4.6 29.2 0.5 CB B:GLN148 4.7 28.9 1.0 O A:HOH371 4.7 27.1 1.0 O A:HOH349 4.8 39.4 1.0 OE1 B:GLN148 4.8 68.7 1.0 CB B:VAL151 5.0 24.9 1.0

L.Wang, Y.Chen, W.Liu, J.Lan, F.Shang, Y.Xu. The Crystal Structure of Competence or Damage-Inducible Protein From Enterobacter Asburiae To Be Published.