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Sodium in PDB 6krg: Crystal Structure of Sfgfp Y182TMSIPHE

Protein crystallography data

The structure of Crystal Structure of Sfgfp Y182TMSIPHE, PDB code: 6krg was solved by J.P.Sun, J.Y.Wang, Z.L.Zhu, Q.T.He, P.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.72 / 1.40
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 68.565, 68.565, 119.260, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 17.3

Other elements in 6krg:

The structure of Crystal Structure of Sfgfp Y182TMSIPHE also contains other interesting chemical elements:

Silicon (Si) 1 atom
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Sfgfp Y182TMSIPHE (pdb code 6krg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Sfgfp Y182TMSIPHE, PDB code: 6krg:

Sodium binding site 1 out of 1 in 6krg

Go back to Sodium Binding Sites List in 6krg
Sodium binding site 1 out of 1 in the Crystal Structure of Sfgfp Y182TMSIPHE


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Sfgfp Y182TMSIPHE within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na306

b:68.3
occ:1.00
O A:HOH452 2.5 32.0 1.0
CL A:CL303 2.6 50.4 1.0
O A:HOH499 2.8 58.7 1.0
CB A:PRO54 4.2 19.1 1.0
CA A:PRO54 4.3 16.9 1.0
CD A:LYS52 4.3 37.3 1.0
CG A:LYS52 4.4 31.3 1.0
O A:LYS52 4.4 19.2 1.0
CB A:LYS52 4.4 24.8 1.0
O A:HOH571 4.5 48.1 1.0
O A:HOH535 4.6 33.1 1.0
O A:HOH476 4.7 23.1 1.0
N A:PRO54 4.8 16.1 1.0
C A:LYS52 5.0 18.6 1.0

Reference:

J.P.Sun, J.Y.Wang, Z.L.Zhu, Q.T.He, P.Xiao. Crystal Structure of Tmsiphers Complexed with Tmsi To Be Published.
Page generated: Tue Dec 15 12:29:14 2020

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