Sodium in PDB 6kok: Crystal Structure of SNX11/SNX10-Pxe Chimera

The structure of Crystal Structure of SNX11/SNX10-Pxe Chimera, PDB code: 6kok was solved by T.Xu, J.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.53 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.103, 47.910, 87.309, 90.00, 94.39, 90.00
R / Rfree (%)	20.4 / 25

The structure of Crystal Structure of SNX11/SNX10-Pxe Chimera also contains other interesting chemical elements:

Chlorine

(Cl)

13 atoms

The binding sites of Sodium atom in the Crystal Structure of SNX11/SNX10-Pxe Chimera (pdb code 6kok). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of SNX11/SNX10-Pxe Chimera, PDB code: 6kok:

Sodium binding site 1 out of 1 in the Crystal Structure of SNX11/SNX10-Pxe Chimera


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of SNX11/SNX10-Pxe Chimera within 5.0Å range: probe atom residue distance (Å) B Occ B:Na206 b:15.2 occ:1.00 CL B:CL202 2.6 12.9 1.0 O B:HOH322 3.4 12.7 1.0 CB B:PRO133 4.1 7.8 1.0 CG B:GLU134 4.3 4.4 1.0 OG B:SER131 4.5 3.9 1.0 N B:GLU134 4.9 2.2 1.0 CG B:PRO133 4.9 5.2 1.0

T.Xu, Q.Gan, B.Wu, M.Yin, J.Xu, X.Shu, J.Liu. Molecular Basis For Pi(3,5)P2RECOGNITION By SNX11, A Protein Involved in Lysosomal Degradation and Endosome Homeostasis Regulation. J.Mol.Biol. V. 432 4750 2020.
ISSN: ESSN 1089-8638
PubMed: 32561432
DOI: 10.1016/J.JMB.2020.06.010