Sodium in PDB 6kko: The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa

The structure of The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa, PDB code: 6kko was solved by J.H.Gan, C.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.74 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	75.618, 42.015, 96.584, 90.00, 93.45, 90.00
R / Rfree (%)	23.2 / 27.8

The binding sites of Sodium atom in the The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa (pdb code 6kko). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa, PDB code: 6kko:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Na2002 b:74.0 occ:1.00 O1P D:TPO68 2.0 40.2 1.0 O2A B:ADP2001 2.0 80.6 1.0 OD1 B:ASN65 2.4 36.6 1.0 O2B B:ADP2001 2.8 65.9 1.0 O1B B:ADP2001 2.9 66.6 1.0 P D:TPO68 3.3 37.5 1.0 PB B:ADP2001 3.3 65.0 1.0 PA B:ADP2001 3.3 75.8 1.0 CG B:ASN65 3.4 33.3 1.0 O3A B:ADP2001 3.6 73.0 1.0 O3P D:TPO68 3.8 37.5 1.0 O2P D:TPO68 3.8 35.7 1.0 O D:HOH218 3.8 38.5 1.0 ND1 B:HIS68 3.9 50.9 1.0 ND2 B:ASN65 3.9 37.5 1.0 O5' B:ADP2001 4.1 78.2 1.0 CA B:GLY148 4.2 35.5 1.0 N B:GLY148 4.4 40.3 1.0 CE1 B:HIS68 4.4 53.6 1.0 O1A B:ADP2001 4.5 74.2 1.0 OG1 D:TPO68 4.5 36.2 1.0 CB B:ASN65 4.6 28.9 1.0 O3B B:ADP2001 4.7 61.4 1.0 CA B:ASN65 4.9 29.2 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Siab-Siac Complex From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1101 b:53.1 occ:1.00 O1P C:TPO68 2.0 42.4 1.0 O2A A:ADP1001 2.1 66.0 1.0 OD1 A:ASN65 2.5 33.5 1.0 O1B A:ADP1001 2.9 62.4 1.0 O2B A:ADP1001 3.0 67.5 1.0 P C:TPO68 3.2 40.7 1.0 PB A:ADP1001 3.3 66.0 1.0 PA A:ADP1001 3.3 68.2 1.0 CG A:ASN65 3.5 31.4 1.0 O2P C:TPO68 3.6 35.5 1.0 O3A A:ADP1001 3.6 71.2 1.0 O3P C:TPO68 3.8 37.6 1.0 O C:HOH1217 3.8 34.0 1.0 ND2 A:ASN65 4.1 29.6 1.0 O5' A:ADP1001 4.1 70.5 1.0 ND1 A:HIS68 4.1 56.1 1.0 CA A:GLY148 4.4 30.8 1.0 N A:GLY148 4.5 39.7 1.0 O1A A:ADP1001 4.5 70.0 1.0 OG1 C:TPO68 4.5 35.6 1.0 CE1 A:HIS68 4.7 55.6 1.0 CB A:ASN65 4.7 25.4 1.0 O3B A:ADP1001 4.7 66.5 1.0 CA A:ASN65 4.9 25.9 1.0

G.K.Chen, J.H.Gan, C.Yang, Y.L.Zuo, J.Peng, M.Li, W.P.Huo, Y.P.Xie, Y.N.Zhang, T.T.Wang, X.Deng, H.H.Liang. The Siaa/B/C/D Signaling Network Regulates Biofilm Formation in Pseudomonas Aeruginosa. Embo J. V. 39 03412 2020.
ISSN: ESSN 1460-2075
PubMed: 32090355
DOI: 10.15252/EMBJ.2019103412