Sodium in PDB 6j6v: Crystal Structure of Heat Shock Factor 4-Dbd

The structure of Crystal Structure of Heat Shock Factor 4-Dbd, PDB code: 6j6v was solved by L.Guo, Z.Y.Xiao, S.Wang, W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.98 / 1.20
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	44.619, 68.229, 80.099, 90.00, 90.00, 90.00
R / Rfree (%)	13.3 / 15.1

The binding sites of Sodium atom in the Crystal Structure of Heat Shock Factor 4-Dbd (pdb code 6j6v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Heat Shock Factor 4-Dbd, PDB code: 6j6v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Heat Shock Factor 4-Dbd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Heat Shock Factor 4-Dbd within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:6.8 occ:0.42 OD1 A:ASP34 2.3 14.7 1.0 O A:VAL28 2.4 13.3 1.0 OG1 A:THR33 2.4 14.9 1.0 O A:ILE37 2.4 13.5 1.0 O A:ASP30 2.5 15.8 1.0 O A:LEU27 3.0 14.3 1.0 C A:VAL28 3.2 12.6 1.0 N A:ASP34 3.4 15.2 1.0 CG A:ASP34 3.4 15.7 1.0 C A:ASP30 3.5 15.4 1.0 C A:THR33 3.5 14.8 1.0 N A:ASP30 3.5 14.5 1.0 CA A:ASP34 3.6 15.2 1.0 C A:ILE37 3.6 13.2 1.0 CB A:THR33 3.7 16.0 1.0 CA A:VAL28 3.9 12.2 1.0 C A:GLY29 4.0 14.5 1.0 CA A:ASP30 4.0 16.0 1.0 O A:THR33 4.0 14.7 1.0 CA A:THR33 4.0 15.5 1.0 C A:LEU27 4.1 13.8 1.0 CB A:ASP34 4.1 16.3 1.0 CA A:ARG38 4.1 12.6 1.0 N A:GLY29 4.1 12.9 1.0 O A:HOH354 4.1 15.1 1.0 N A:THR33 4.2 15.7 1.0 CB A:ASP30 4.3 17.1 1.0 N A:ARG38 4.3 12.8 1.0 CG2 A:ILE37 4.3 14.9 1.0 OD2 A:ASP34 4.4 17.4 1.0 CA A:GLY29 4.4 14.5 1.0 N A:VAL28 4.5 12.8 1.0 CB A:ARG38 4.5 13.6 1.0 O A:GLY29 4.5 16.3 1.0 N A:PRO31 4.6 15.9 1.0 CA A:ILE37 4.7 13.2 1.0 CG2 A:THR33 4.8 17.2 1.0 CA A:PRO31 4.9 17.5 1.0 C A:ASP34 4.9 16.5 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Heat Shock Factor 4-Dbd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Heat Shock Factor 4-Dbd within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:28.1 occ:0.46 O A:HOH353 2.7 19.1 1.0 O A:HOH319 2.9 19.2 1.0 O A:HOH354 3.1 15.1 1.0 CD1 A:TRP39 3.5 11.7 1.0 O A:GLY29 3.7 16.3 1.0 O A:HOH416 3.7 54.4 1.0 CA A:GLY29 4.0 14.5 1.0 CD A:ARG108 4.0 11.8 1.0 O A:HOH411 4.2 39.4 1.0 O A:HOH359 4.2 52.9 1.0 NE1 A:TRP39 4.3 11.3 1.0 C A:GLY29 4.3 14.5 1.0 O A:HOH357 4.5 28.6 1.0 CG A:TRP39 4.5 10.9 1.0 CB A:TRP39 4.8 11.3 1.0 O A:HOH408 4.8 52.2 1.0 O A:HOH405 4.9 58.1 1.0 OD2 A:ASP34 4.9 17.4 1.0 CG A:ARG108 4.9 11.4 1.0

L.Guo, Z.Y.Xiao, S.Wang, W.Liu. Structure of Heat Shock Factor 4-Dbd at 1.20 Angstroms Resolution. To Be Published.