Atomistry » Sodium » PDB 6iff-6jbd » 6ivq
Atomistry »
  Sodium »
    PDB 6iff-6jbd »
      6ivq »

Sodium in PDB 6ivq: Crystal Structure of A Membrane Protein S19A

Protein crystallography data

The structure of Crystal Structure of A Membrane Protein S19A, PDB code: 6ivq was solved by A.Kittredge, F.Fukuda, Y.Zhang, T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.61 / 2.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 113.701, 159.642, 161.299, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 23.9

Other elements in 6ivq:

The structure of Crystal Structure of A Membrane Protein S19A also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms
Zinc (Zn) 17 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Membrane Protein S19A (pdb code 6ivq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Membrane Protein S19A, PDB code: 6ivq:

Sodium binding site 1 out of 1 in 6ivq

Go back to Sodium Binding Sites List in 6ivq
Sodium binding site 1 out of 1 in the Crystal Structure of A Membrane Protein S19A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Membrane Protein S19A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na308

b:74.2
occ:1.00
OD2 D:ASP190 2.6 83.6 1.0
OD2 D:ASP186 2.6 72.4 1.0
O C:HOH403 2.9 72.4 1.0
OD1 D:ASN187 3.0 74.8 1.0
NE2 C:GLN99 3.3 66.6 1.0
CG D:ASP190 3.4 68.7 1.0
CG D:ASP186 3.5 69.7 1.0
OD1 D:ASP190 3.6 81.8 1.0
N D:ASN187 3.7 55.5 1.0
CB D:ASP186 3.7 69.7 1.0
C D:ASP186 3.7 59.2 1.0
CA D:ASN187 4.0 57.9 1.0
O D:ASP186 4.0 58.8 1.0
CD2 C:LEU184 4.1 54.7 1.0
CG D:ASN187 4.1 77.3 1.0
CA D:ASP186 4.3 61.8 1.0
CE C:LYS188 4.4 64.5 1.0
CD C:GLN99 4.5 63.8 1.0
CB D:ASN187 4.6 63.5 1.0
CB C:LEU184 4.6 57.6 1.0
O D:GLY183 4.7 49.5 1.0
OD1 D:ASP186 4.7 80.6 1.0
NZ C:LYS188 4.7 72.4 1.0
CB D:ASP190 4.7 57.9 1.0
O C:LEU184 4.8 63.9 1.0
CG C:LEU184 4.8 58.6 1.0

Reference:

C.Ji, A.Kittredge, A.Hopiavuori, N.Ward, S.Chen, Y.Fukuda, Y.Zhang, T.Yang. Dual CA2+-Dependent Gates in Human BESTROPHIN1 Underlie Disease-Causing Mechanisms of Gain-of-Function Mutations. Commun Biol V. 2 240 2019.
ISSN: ESSN 2399-3642
PubMed: 31263784
DOI: 10.1038/S42003-019-0433-3
Page generated: Tue Oct 8 09:40:06 2024

Last articles

Cl in 5TQU
Cl in 5TQJ
Cl in 5TPI
Cl in 5TQI
Cl in 5TPU
Cl in 5TPH
Cl in 5TPX
Cl in 5TPG
Cl in 5TOW
Cl in 5TNU
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy