Atomistry » Sodium » PDB 6ic1-6jbc » 6is4
Atomistry »
  Sodium »
    PDB 6ic1-6jbc »
      6is4 »

Sodium in PDB 6is4: Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain

Protein crystallography data

The structure of Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain, PDB code: 6is4 was solved by Y.Wen, Z.Ouyang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.69 / 1.85
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.928, 66.928, 153.057, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 21.7

Other elements in 6is4:

The structure of Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain (pdb code 6is4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain, PDB code: 6is4:

Sodium binding site 1 out of 1 in 6is4

Go back to Sodium Binding Sites List in 6is4
Sodium binding site 1 out of 1 in the Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:30.2
occ:1.00
H A:GLU147 2.3 36.9 1.0
HZ2 A:LYS198 2.8 40.4 1.0
O A:HOH420 3.1 30.4 1.0
HA A:ILE146 3.1 36.5 1.0
HZ3 A:LYS198 3.1 40.4 1.0
O A:HOH427 3.1 49.1 1.0
N A:GLU147 3.2 30.5 1.0
HG23 A:ILE146 3.2 40.4 1.0
HD2 A:LYS198 3.3 33.9 1.0
NZ A:LYS198 3.4 33.4 1.0
HB2 A:GLU147 3.5 35.9 1.0
HG3 A:GLU147 3.8 41.1 1.0
HD3 A:LYS198 3.8 33.9 1.0
CA A:ILE146 3.9 30.2 1.0
O A:GLU147 3.9 30.3 1.0
CD A:LYS198 3.9 28.0 1.0
CG2 A:ILE146 4.0 33.4 1.0
HZ1 A:LYS198 4.0 40.4 1.0
C A:ILE146 4.0 34.9 1.0
HG22 A:ILE146 4.1 40.4 1.0
CA A:GLU147 4.1 30.1 1.0
CB A:GLU147 4.1 29.6 1.0
O A:HOH490 4.1 49.9 1.0
HE2 A:TYR202 4.1 52.0 1.0
O A:HOH459 4.2 47.4 1.0
CE A:LYS198 4.3 31.6 1.0
CG A:GLU147 4.4 34.0 1.0
HG12 A:ILE146 4.4 46.9 1.0
C A:GLU147 4.4 25.1 1.0
CB A:ILE146 4.5 33.0 1.0
O A:GLU145 4.5 39.8 1.0
OE1 A:GLU147 4.5 75.4 1.0
O A:HOH481 4.6 45.4 1.0
HH A:TYR202 4.7 78.6 1.0
HG21 A:ILE146 4.8 40.4 1.0
HE3 A:LYS198 4.8 38.3 1.0
CD A:GLU147 4.9 62.1 1.0
HA A:GLU147 5.0 36.5 1.0
HE2 A:LYS198 5.0 38.3 1.0
HB3 A:GLU147 5.0 35.9 1.0
HB3 A:LYS198 5.0 33.3 1.0

Reference:

Y.Wen, Z.Ouyang. Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain To Be Published.
Page generated: Tue Dec 15 12:24:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy