Sodium in PDB 6iqc: Wild-Type Programmed Cell Death 5 Protein From Sulfolobus Solfataricus

The structure of Wild-Type Programmed Cell Death 5 Protein From Sulfolobus Solfataricus, PDB code: 6iqc was solved by C.Y.Chen, K.F.Lin, C.Y.Hsu, M.J.Tsai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.48 / 1.49
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	75.094, 36.634, 36.197, 90.00, 98.40, 90.00
R / Rfree (%)	21 / 27.8

The binding sites of Sodium atom in the Wild-Type Programmed Cell Death 5 Protein From Sulfolobus Solfataricus (pdb code 6iqc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Wild-Type Programmed Cell Death 5 Protein From Sulfolobus Solfataricus, PDB code: 6iqc:

Sodium binding site 1 out of 1 in the Wild-Type Programmed Cell Death 5 Protein From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Wild-Type Programmed Cell Death 5 Protein From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:21.1 occ:1.00 OG1 A:THR50 3.0 21.6 1.0 N A:ASP90 3.2 19.1 1.0 O A:HOH310 3.3 29.4 1.0 CB A:THR50 3.6 19.4 1.0 CB A:THR89 3.8 23.1 1.0 CB A:ASP90 3.8 21.4 1.0 CG2 A:THR50 3.8 17.3 1.0 CA A:THR89 3.9 20.6 1.0 C A:THR89 4.0 19.0 1.0 CB A:GLU52 4.1 27.3 1.0 CA A:ASP90 4.1 20.5 1.0 CG2 A:THR89 4.4 22.7 1.0 N A:ALA53 4.8 19.3 1.0 N A:GLU52 4.9 21.0 1.0 CA A:GLU52 4.9 23.4 1.0 OG1 A:THR89 4.9 24.4 1.0

K.F.Lin, J.Y.Hsu, D.L.Hsieh, M.J.Tsai, C.H.Yeh, C.Y.Chen. Crystal Structure of the Programmed Cell Death 5 Protein From Sulfolobus Solfataricus. Acta Crystallogr F Struct V. 75 73 2019BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 30713157
DOI: 10.1107/S2053230X18017673