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Sodium in PDB 6inc: Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae

Enzymatic activity of Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae

All present enzymatic activity of Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae:
4.1.1.5;

Protein crystallography data

The structure of Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae, PDB code: 6inc was solved by W.Wu, Q.Zhang, M.Bartlam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.58 / 1.60
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 55.152, 55.152, 119.377, 90.00, 90.00, 120.00
R / Rfree (%) 15.2 / 18

Other elements in 6inc:

The structure of Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae (pdb code 6inc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae, PDB code: 6inc:

Sodium binding site 1 out of 1 in 6inc

Go back to Sodium Binding Sites List in 6inc
Sodium binding site 1 out of 1 in the Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Acetolactate Decarboxylase From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na306

b:22.9
occ:1.00
 H11 A:EDO305 1.9 31.6 1.0
H12 A:EDO305 2.0 31.6 1.0
H A:VAL151 2.2 12.9 1.0
C1 A:EDO305 2.3 26.4 1.0
HG12 A:VAL151 2.5 21.6 1.0
HA A:THR150 2.5 10.1 1.0
OE2 A:GLU69 2.6 9.4 1.0
H22 A:EDO305 2.9 33.5 1.0
N A:VAL151 3.0 10.7 1.0
HG23 A:THR150 3.0 18.6 1.0
C2 A:EDO305 3.0 27.9 1.0
HG3 A:GLU69 3.2 10.0 1.0
H21 A:EDO305 3.2 33.5 1.0
HB A:VAL151 3.3 16.3 1.0
CG1 A:VAL151 3.4 18.0 1.0
CA A:THR150 3.4 8.4 1.0
CD A:GLU69 3.5 8.8 1.0
O1 A:EDO305 3.6 24.9 1.0
HB3 A:HIS211 3.7 7.6 1.0
C A:THR150 3.7 9.8 1.0
HO1 A:EDO305 3.7 29.9 1.0
CB A:VAL151 3.7 13.6 1.0
CG2 A:THR150 3.8 15.5 1.0
CG A:GLU69 3.8 8.4 1.0
HB2 A:HIS211 3.8 7.6 1.0
HG22 A:THR150 3.8 18.6 1.0
HG11 A:VAL151 3.9 21.6 1.0
CA A:VAL151 4.0 10.6 1.0
O A:ARG149 4.0 10.2 1.0
HG13 A:VAL151 4.0 21.6 1.0
CB A:HIS211 4.1 6.3 1.0
CB A:THR150 4.1 10.7 1.0
O A:HOH550 4.2 14.5 1.0
O2 A:EDO305 4.4 36.6 1.0
CG A:HIS211 4.4 6.9 1.0
HG2 A:GLU69 4.4 10.0 1.0
O A:HOH500 4.4 32.6 1.0
N A:THR150 4.5 11.2 1.0
OE1 A:GLU69 4.5 9.0 1.0
HA A:VAL151 4.5 12.7 1.0
HB2 A:GLU69 4.6 9.1 1.0
HG21 A:THR150 4.6 18.6 1.0
HD21 A:LEU165 4.6 31.6 1.0
C A:ARG149 4.6 10.5 1.0
ND1 A:HIS211 4.7 8.2 1.0
OG1 A:THR150 4.7 13.2 1.0
ZN A:ZN301 4.7 8.2 1.0
CB A:GLU69 4.8 7.6 1.0
O A:THR150 4.9 13.2 1.0
HB A:THR150 5.0 12.9 1.0
HO2 A:EDO305 5.0 43.9 1.0

Reference:

W.Wu, Q.Zhao, S.Che, H.Jia, H.Liang, H.Zhang, R.Liu, Q.Zhang, M.Bartlam. Structural Characterization of An Acetolactate Decarboxylase From Klebsiella Pneumoniae Biochem. Biophys. Res. V. 509 154 2019COMMUN..
ISSN: ESSN 1090-2104
PubMed: 30580999
DOI: 10.1016/J.BBRC.2018.12.094
Page generated: Tue Oct 8 09:38:54 2024

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