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Sodium in PDB 6ilx: Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis

Enzymatic activity of Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis

All present enzymatic activity of Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis:
3.1.1.101;

Protein crystallography data

The structure of Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis, PDB code: 6ilx was solved by C.C.Liu, C.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.84 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.087, 51.077, 85.378, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 19.5

Other elements in 6ilx:

The structure of Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis (pdb code 6ilx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis, PDB code: 6ilx:

Sodium binding site 1 out of 1 in 6ilx

Go back to Sodium Binding Sites List in 6ilx
Sodium binding site 1 out of 1 in the Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Strcuture of Petase W159F Mutant From Ideonella Sakaiensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:36.2
occ:1.00
 O A:TYR63 3.1 13.3 1.0
O A:GLY64 3.2 13.1 1.0
C A:GLY64 3.9 11.2 1.0
CA A:GLY64 3.9 10.8 1.0
O A:HOH496 4.1 29.9 1.0
C A:TYR63 4.2 11.3 1.0
CB A:PRO60 4.2 13.5 1.0
O A:PRO60 4.4 14.8 1.0
CG A:PRO60 4.4 14.9 1.0
N A:GLY64 4.6 11.0 1.0
OD1 A:ASN114 4.6 16.0 1.0
CD A:PRO60 4.8 13.4 1.0

Reference:

C.Liu, C.Shi, S.Zhu, R.Wei, C.C.Yin. Structural and Functional Characterization of Polyethylene Terephthalate Hydrolase From Ideonella Sakaiensis. Biochem. Biophys. Res. V. 508 289 2019COMMUN..
ISSN: ESSN 1090-2104
PubMed: 30502092
DOI: 10.1016/J.BBRC.2018.11.148
Page generated: Tue Oct 8 09:38:35 2024

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