Sodium in PDB 6ilw: Crystal Strcuture of Petase From Ideonella Sakaiensis

All present enzymatic activity of Crystal Strcuture of Petase From Ideonella Sakaiensis:
3.1.1.101;

The structure of Crystal Strcuture of Petase From Ideonella Sakaiensis, PDB code: 6ilw was solved by C.C.Liu, C.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.08 / 1.58
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.964, 51.410, 85.652, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 17.6

The structure of Crystal Strcuture of Petase From Ideonella Sakaiensis also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Strcuture of Petase From Ideonella Sakaiensis (pdb code 6ilw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Strcuture of Petase From Ideonella Sakaiensis, PDB code: 6ilw:

Sodium binding site 1 out of 1 in the Crystal Strcuture of Petase From Ideonella Sakaiensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Strcuture of Petase From Ideonella Sakaiensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:30.9 occ:1.00 O A:HOH517 2.9 30.6 1.0 O A:PRO60 2.9 13.0 1.0 N A:GLY62 3.0 11.7 1.0 CA A:SER61 3.7 11.3 1.0 C A:PRO60 3.8 9.9 1.0 C A:SER61 3.8 12.9 1.0 CA A:GLY62 3.9 12.7 1.0 O A:HOH525 4.0 32.1 1.0 N A:SER61 4.1 11.5 1.0 O A:HOH598 4.2 27.4 1.0 O A:TYR63 4.2 12.5 1.0 N A:TYR63 4.3 10.5 1.0 C A:GLY62 4.5 14.7 1.0 O A:SER61 5.0 15.1 1.0 CB A:SER61 5.0 17.1 1.0

C.Liu, C.Shi, S.Zhu, R.Wei, C.C.Yin. Structural and Functional Characterization of Polyethylene Terephthalate Hydrolase From Ideonella Sakaiensis. Biochem. Biophys. Res. V. 508 289 2019COMMUN..
ISSN: ESSN 1090-2104
PubMed: 30502092
DOI: 10.1016/J.BBRC.2018.11.148