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Sodium in PDB 6i9x: Urate Oxidase Under 35 Bar of Argon

Enzymatic activity of Urate Oxidase Under 35 Bar of Argon

All present enzymatic activity of Urate Oxidase Under 35 Bar of Argon:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Under 35 Bar of Argon, PDB code: 6i9x was solved by T.Prange, N.Colloc'h, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.78 / 1.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.234, 96.114, 105.389, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 17.8

Other elements in 6i9x:

The structure of Urate Oxidase Under 35 Bar of Argon also contains other interesting chemical elements:

Argon (Ar) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Urate Oxidase Under 35 Bar of Argon (pdb code 6i9x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Urate Oxidase Under 35 Bar of Argon, PDB code: 6i9x:

Sodium binding site 1 out of 1 in 6i9x

Go back to Sodium Binding Sites List in 6i9x
Sodium binding site 1 out of 1 in the Urate Oxidase Under 35 Bar of Argon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxidase Under 35 Bar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1103

b:37.5
occ:1.00
O A:HOH1401 2.4 51.6 1.0
O A:ILE88 2.5 32.0 1.0
O A:ILE94 2.5 26.2 1.0
OE1 A:GLU136 2.6 54.4 1.0
O A:TYR91 2.7 26.5 1.0
O A:ASN92 3.3 34.5 1.0
O A:HOH1366 3.5 51.6 1.0
C A:ILE88 3.5 26.7 1.0
CD A:GLU136 3.6 60.4 1.0
C A:ILE94 3.7 23.8 1.0
C A:ASN92 3.7 30.2 1.0
C A:TYR91 3.8 26.9 1.0
CA A:ILE88 3.8 25.1 1.0
CA A:ASN92 3.9 37.1 1.0
ND1 A:HIS95 4.0 39.8 1.0
OE2 A:GLU136 4.0 77.0 1.0
N A:ILE94 4.2 23.0 1.0
CB A:ILE88 4.2 28.9 1.0
N A:ASN92 4.2 28.6 1.0
CA A:ILE94 4.5 22.9 1.0
N A:HIS93 4.5 26.3 1.0
CE1 A:HIS95 4.5 42.2 1.0
N A:HIS95 4.6 22.0 1.0
CA A:HIS95 4.7 23.6 1.0
N A:GLU89 4.7 24.2 1.0
CG A:GLU136 4.8 46.7 1.0
CB A:ILE94 4.9 22.8 1.0
C A:HIS93 5.0 23.8 1.0
O A:PHE87 5.0 24.4 1.0
CA A:TYR91 5.0 24.8 1.0

Reference:

T.Prange, N.Colloc'h, P.Carpentier. Urate Oxidase Under High Pressure of Argon To Be Published.
Page generated: Tue Dec 15 12:23:56 2020

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