Sodium in PDB 6i4y: X-Ray Structure of the Human Mitochondrial PRELID3B-TRIAP1 Complex

The structure of X-Ray Structure of the Human Mitochondrial PRELID3B-TRIAP1 Complex, PDB code: 6i4y was solved by X.Miliara, J.-L.Berry, R.M.L.Morgan, S.J.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	76.23 / 2.91
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	93.020, 133.000, 146.050, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 29.6

The binding sites of Sodium atom in the X-Ray Structure of the Human Mitochondrial PRELID3B-TRIAP1 Complex (pdb code 6i4y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Human Mitochondrial PRELID3B-TRIAP1 Complex, PDB code: 6i4y:

Sodium binding site 1 out of 1 in the X-Ray Structure of the Human Mitochondrial PRELID3B-TRIAP1 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Human Mitochondrial PRELID3B-TRIAP1 Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:84.9 occ:1.00 OD2 B:ASP107 3.4 94.2 1.0 OG B:SER105 3.6 0.6 1.0 CG2 B:THR96 3.8 87.1 1.0 OG1 B:THR96 3.9 97.1 1.0 OD1 B:ASP107 4.1 88.8 1.0 CG B:ASP107 4.2 87.6 1.0 CB B:THR96 4.5 83.7 1.0 CB B:SER105 4.7 0.7 1.0 CG2 B:THR101 4.9 0.3 1.0

X.Miliara, T.Tatsuta, J.L.Berry, S.L.Rouse, K.Solak, D.S.Chorev, D.Wu, C.V.Robinson, S.Matthews, T.Langer. Structural Determinants of Lipid Specificity Within Ups/Preli Lipid Transfer Proteins. Nat Commun V. 10 1130 2019.
ISSN: ESSN 2041-1723
PubMed: 30850607
DOI: 10.1038/S41467-019-09089-X