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Sodium in PDB 6hux: Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution
Enzymatic activity of Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution
All present enzymatic activity of Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution:
1.12.98.2;
1.12.98.2;
Protein crystallography data
The structure of Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution, PDB code: 6hux
was solved by
T.Watanabe,
T.Wagner,
G.Huang,
J.Kahnt,
K.Ataka,
U.Ermler,
S.Shima,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 38.97 / 2.50 |
| Space group | H 3 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 124.281, 124.281, 150.086, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 16.5 / 21.9 |
Other elements in 6hux:
The structure of Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
| Iron | (Fe) | 1 atom |
| Chlorine | (Cl) | 1 atom |
Sodium Binding Sites:
The binding sites of Sodium atom in the Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution
(pdb code 6hux). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution, PDB code: 6hux:
In total only one binding site of Sodium was determined in the Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution, PDB code: 6hux:
Sodium binding site 1 out of 1 in 6hux
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Sodium Binding Sites List in 6hux
Sodium binding site 1 out
of 1 in the Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Hmdii From Methanocaldococcus Jannaschii Reconstitued with Fe- Guanylylpyridinol (Fegp) Cofactor and Co-Crystallized with Methenyl- Tetrahydromethanopterin at 2.5 A Resolution within 5.0Å range:
|
Reference:
T.Watanabe,
T.Wagner,
G.Huang,
J.Kahnt,
K.Ataka,
U.Ermler,
S.Shima.
The Bacterial [Fe]-Hydrogenase Paralog Hmdii Uses Tetrahydrofolate Derivatives As Substrates. Angew. Chem. Int. Ed. Engl. V. 58 3506 2019.
ISSN: ESSN 1521-3773
PubMed: 30600878
DOI: 10.1002/ANIE.201813465
Page generated: Tue Dec 15 12:22:03 2020
ISSN: ESSN 1521-3773
PubMed: 30600878
DOI: 10.1002/ANIE.201813465
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