Sodium in PDB 6hr1: Crystal Structure of the Yfpnano Fusion Protein

All present enzymatic activity of Crystal Structure of the Yfpnano Fusion Protein:
2.7.11.18;

The structure of Crystal Structure of the Yfpnano Fusion Protein, PDB code: 6hr1 was solved by R.M.Benoit, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.59 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.700, 117.800, 84.500, 90.00, 99.90, 90.00
R / Rfree (%)	18.1 / 21.4

The structure of Crystal Structure of the Yfpnano Fusion Protein also contains other interesting chemical elements:

Calcium

(Ca)

8 atoms

The binding sites of Sodium atom in the Crystal Structure of the Yfpnano Fusion Protein (pdb code 6hr1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Yfpnano Fusion Protein, PDB code: 6hr1:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Yfpnano Fusion Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Na505 b:53.2 occ:1.00 OE1 B:GLU111 2.2 52.5 1.0 O B:HOH735 2.7 39.9 1.0 NZ B:LYS113 3.0 47.1 1.0 CD B:GLU111 3.1 56.6 1.0 CB B:GLU111 3.3 32.4 1.0 CG B:GLU111 3.4 43.2 1.0 CE B:LYS113 3.5 44.5 1.0 CD B:ARG122 4.2 40.1 1.0 NH1 B:ARG122 4.2 32.5 1.0 OE2 B:GLU111 4.2 52.7 1.0 CD B:LYS113 4.2 34.6 1.0 O B:HOH748 4.5 39.5 1.0 CB B:ARG122 4.5 26.9 1.0 CG B:ARG122 4.6 34.4 1.0 CA B:GLU111 4.7 27.5 1.0 O B:GLU111 4.7 25.5 1.0 C B:GLU111 4.9 24.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Yfpnano Fusion Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Yfpnano Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Na506 b:51.3 occ:1.00 OE1 B:GLU115 2.3 39.1 1.0 O B:HOH748 2.6 39.5 1.0 NH1 B:ARG122 2.9 32.5 1.0 CE B:LYS113 3.4 44.5 1.0 CD B:GLU115 3.4 40.8 1.0 NH2 B:ARG122 3.5 32.8 1.0 CB B:GLU115 3.6 35.1 1.0 CZ B:ARG122 3.6 33.0 1.0 CG B:GLU115 3.8 43.2 1.0 NZ B:LYS113 4.0 47.1 1.0 OE2 B:GLU115 4.5 39.9 1.0 CA B:GLU115 4.6 28.4 1.0 CD B:LYS113 4.6 34.6 1.0 O B:HOH735 4.7 39.9 1.0 CG B:LYS113 4.8 34.0 1.0 NE B:ARG122 4.9 32.2 1.0 CG1 B:VAL120 4.9 40.5 1.0

R.M.B.Benoit, R.M.Benoit. N/A N/A.