Sodium in PDB 6fjh: Crystal Structure of the Seleniated Lkce From Streptomyces Rochei

The structure of Crystal Structure of the Seleniated Lkce From Streptomyces Rochei, PDB code: 6fjh was solved by J.Dorival, F.Risser, C.Jacob, S.Collin, G.Drager, A.Kirschning, C.Paris, B.Chagot, A.Gruez, K.J.Weissman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.66 / 3.15
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	125.300, 125.300, 154.530, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 24

The binding sites of Sodium atom in the Crystal Structure of the Seleniated Lkce From Streptomyces Rochei (pdb code 6fjh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Seleniated Lkce From Streptomyces Rochei, PDB code: 6fjh:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Seleniated Lkce From Streptomyces Rochei


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Seleniated Lkce From Streptomyces Rochei within 5.0Å range: probe atom residue distance (Å) B Occ A:Na603 b:46.5 occ:1.00 O B:HOH744 2.7 67.7 1.0 OG A:SER91 3.2 68.6 1.0 O B:LEU106 4.1 58.9 1.0 CB A:SER91 4.1 63.0 1.0 O A:GLY301 4.6 69.9 1.0 CD2 A:LEU106 4.7 59.3 1.0 CB A:PRO89 4.8 65.0 1.0 CG A:PRO89 4.9 69.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Seleniated Lkce From Streptomyces Rochei


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Seleniated Lkce From Streptomyces Rochei within 5.0Å range: probe atom residue distance (Å) B Occ B:Na603 b:57.5 occ:1.00 O A:HOH738 2.6 30.0 1.0 OG B:SER91 3.1 65.1 1.0 CB B:SER91 4.0 49.3 1.0 O A:LEU106 4.2 65.8 1.0 O B:GLY301 4.3 68.4 1.0 CG1 B:VAL330 4.6 42.3 1.0 CD2 B:LEU106 4.7 56.2 1.0 CD1 B:LEU106 4.9 58.5 1.0 CB B:PRO89 4.9 51.3 1.0

J.Dorival, F.Risser, C.Jacob, S.Collin, G.Drager, C.Paris, B.Chagot, A.Kirschning, A.Gruez, K.J.Weissman. Insights Into A Dual Function Amide Oxidase/Macrocyclase From Lankacidin Biosynthesis. Nat Commun V. 9 3998 2018.
ISSN: ESSN 2041-1723
PubMed: 30266997
DOI: 10.1038/S41467-018-06323-W