Sodium in PDB 6fhd: Crystal Structure of the Amyloid-Like, Out-of-Register Beta-Sheets, Polymorph of the Lfkffk Segment From the S. Aureus PSMALPHA3

The structure of Crystal Structure of the Amyloid-Like, Out-of-Register Beta-Sheets, Polymorph of the Lfkffk Segment From the S. Aureus PSMALPHA3, PDB code: 6fhd was solved by M.Landau, N.Salinas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.30 / 1.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	41.030, 11.730, 24.610, 90.00, 121.89, 90.00
R / Rfree (%)	17.1 / 18.7

The binding sites of Sodium atom in the Crystal Structure of the Amyloid-Like, Out-of-Register Beta-Sheets, Polymorph of the Lfkffk Segment From the S. Aureus PSMALPHA3 (pdb code 6fhd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Amyloid-Like, Out-of-Register Beta-Sheets, Polymorph of the Lfkffk Segment From the S. Aureus PSMALPHA3, PDB code: 6fhd:

Sodium binding site 1 out of 1 in the Crystal Structure of the Amyloid-Like, Out-of-Register Beta-Sheets, Polymorph of the Lfkffk Segment From the S. Aureus PSMALPHA3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Amyloid-Like, Out-of-Register Beta-Sheets, Polymorph of the Lfkffk Segment From the S. Aureus PSMALPHA3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na102 b:25.9 occ:0.50 O B:PHE2 3.7 6.9 1.0 O A:LYS6 3.7 15.1 1.0 CB A:PHE5 4.1 7.9 1.0 N B:PHE2 4.2 7.4 1.0 C B:PHE2 4.3 7.2 1.0 CB B:LEU1 4.4 8.2 1.0 N A:LYS6 4.6 10.8 1.0 CD2 B:LEU1 4.6 8.6 1.0 CG A:PHE5 4.6 8.2 1.0 C A:LYS6 4.7 13.8 1.0 CD2 A:PHE5 4.8 8.7 1.0 CG B:LYS3 4.8 9.6 1.0 CA B:PHE2 4.8 7.4 1.0 CD1 B:LEU1 4.9 9.1 1.0 CG B:LEU1 4.9 8.7 1.0 CA A:PHE5 4.9 8.0 1.0 C B:LEU1 4.9 7.7 1.0 CA B:LEU1 4.9 7.7 1.0 C A:PHE5 4.9 8.6 1.0

N.Salinas, J.P.Colletier, A.Moshe, M.Landau. Extreme Amyloid Polymorphism in Staphylococcus Aureus Virulent Psm Alpha Peptides. Nat Commun V. 9 3512 2018.
ISSN: ESSN 2041-1723
PubMed: 30158633
DOI: 10.1038/S41467-018-05490-0