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Sodium in PDB 6fba: Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol

Enzymatic activity of Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol

All present enzymatic activity of Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol:
2.1.3.2;

Protein crystallography data

The structure of Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol, PDB code: 6fba was solved by S.Lunev, S.S.Bosch, F.A.Batista, C.Wang, C.Wrenger, M.R.Groves, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.13 / 2.00
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 86.757, 86.757, 138.151, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 22.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol (pdb code 6fba). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol, PDB code: 6fba:

Sodium binding site 1 out of 1 in 6fba

Go back to Sodium Binding Sites List in 6fba
Sodium binding site 1 out of 1 in the Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Truncated Aspartate Transcarbamoylase From Plasmodium Falciparum with Bound Inhibitor 2,3-Naphthalenediol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na407

b:39.3
occ:1.00
 O B:HOH541 2.1 45.2 1.0
O A:HOH517 2.3 37.6 1.0
O C:HOH509 2.5 33.6 1.0
O C:HOH556 2.5 29.8 1.0
O A:HOH529 2.5 34.1 1.0
O B:HOH535 2.7 28.5 1.0
O A:HOH531 3.7 38.6 1.0
O B:HOH504 3.8 25.7 1.0
O B:HOH514 3.9 27.4 1.0
O C:VAL125 4.0 28.9 1.0
O B:HOH505 4.1 25.8 1.0
O A:VAL125 4.1 29.8 1.0
O C:HOH549 4.2 36.8 1.0
O B:VAL125 4.2 27.2 1.0
O B:HOH540 4.3 36.5 1.0
ND2 A:ASN127 4.8 44.0 1.0
ND2 C:ASN127 4.8 37.2 1.0
OD1 B:ASN127 4.9 37.7 1.0

Reference:

S.Lunev, S.S.Bosch, F.A.Batista, C.Wang, J.Li, M.Linzke, P.Kruithof, G.Chamoun, A.S.S.Domling, C.Wrenger, M.R.Groves. Identification of A Non-Competitive Inhibitor of Plasmodium Falciparum Aspartate Transcarbamoylase. Biochem. Biophys. Res. V. 497 835 2018COMMUN..
ISSN: ESSN 1090-2104
PubMed: 29476738
DOI: 10.1016/J.BBRC.2018.02.112
Page generated: Tue Dec 15 12:14:58 2020

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