Sodium in PDB 6f5v: Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana

All present enzymatic activity of Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana:
2.6.1.1; 2.6.1.78; 2.6.1.79;

The structure of Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana, PDB code: 6f5v was solved by D.Cobessi, A.Robin, C.Giustini, M.Graindorge, M.Matringe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.70 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	58.470, 73.240, 103.320, 92.49, 87.22, 111.05
R / Rfree (%)	17.2 / 20.1

The binding sites of Sodium atom in the Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana (pdb code 6f5v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana, PDB code: 6f5v:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:57.0 occ:1.00 O A:HOH757 2.4 25.8 1.0 O A:HOH828 2.4 36.6 1.0 O A:HOH802 2.4 49.2 1.0 O A:HOH861 2.5 47.0 1.0 O A:GLU105 2.5 20.7 1.0 O A:HOH711 2.5 21.4 1.0 O A:HIS238 3.7 18.2 1.0 C A:GLU105 3.7 21.2 1.0 O A:HOH913 4.0 34.4 1.0 ND2 A:ASN106 4.0 18.8 1.0 O A:HOH752 4.4 23.6 1.0 CA A:ASN106 4.4 18.6 1.0 N A:ASN106 4.5 16.8 1.0 OE2 A:GLU229 4.6 19.8 1.0 CA A:GLU105 4.6 18.5 1.0 O A:HOH815 4.7 20.7 1.0 C A:HIS238 4.7 17.0 1.0 O A:HOH830 4.8 18.3 1.0 CB A:HIS238 4.9 14.1 1.0 CG A:ASN106 5.0 16.0 1.0 CB A:GLU105 5.0 18.2 1.0 CD2 A:HIS238 5.0 17.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Prephenate Aminotransferase From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:50.9 occ:1.00 O B:HOH847 2.4 44.9 1.0 O B:HOH786 2.4 27.4 1.0 O B:GLU105 2.4 27.7 1.0 O B:HOH884 2.4 51.4 1.0 O B:HOH830 2.4 48.3 1.0 O B:HOH677 2.6 24.6 1.0 C B:GLU105 3.6 30.8 1.0 O B:HIS238 3.8 25.0 1.0 O B:HOH928 3.9 29.7 1.0 ND2 B:ASN106 4.2 23.0 1.0 O B:HOH843 4.4 21.9 1.0 CA B:GLU105 4.5 27.7 1.0 N B:ASN106 4.5 25.8 1.0 CA B:ASN106 4.6 25.5 1.0 OE2 B:GLU229 4.7 23.8 1.0 O B:HOH891 4.7 49.3 1.0 O B:HOH760 4.9 18.7 1.0 CB B:GLU105 4.9 24.8 1.0 C B:HIS238 4.9 24.3 1.0 O B:HOH798 4.9 25.6 1.0

C.Giustini, M.Graindorge, D.Cobessi, S.Crouzy, A.Robin, G.Curien, M.Matringe. Tyrosine Metabolism: Identification of A Key Residue in the Acquisition of Prephenate Aminotransferase Activity By 1 Beta Aspartate Aminotransferase. Febs J. V. 286 2118 2019.
ISSN: ISSN 1742-464X
PubMed: 30771275
DOI: 10.1111/FEBS.14789