Sodium in PDB 6f0r: Glic Mutant E82Q

The structure of Glic Mutant E82Q, PDB code: 6f0r was solved by H.D.Hu, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	180.840, 132.420, 160.060, 90.00, 102.27, 90.00
R / Rfree (%)	24.1 / 25.4

The structure of Glic Mutant E82Q also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

The binding sites of Sodium atom in the Glic Mutant E82Q (pdb code 6f0r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Glic Mutant E82Q, PDB code: 6f0r:

Sodium binding site 1 out of 1 in the Glic Mutant E82Q


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Glic Mutant E82Q within 5.0Å range: probe atom residue distance (Å) B Occ C:Na401 b:60.5 occ:1.00 OG1 C:THR226 3.7 31.0 1.0 OG1 B:THR226 3.9 38.2 1.0 OG1 D:THR226 4.2 36.7 1.0 OG1 A:THR226 4.3 32.9 1.0 OG1 E:THR226 4.5 30.2 1.0 CG2 C:THR226 4.9 36.3 1.0 CB C:THR226 4.9 37.4 1.0 CG2 B:THR226 4.9 38.9 1.0

A.Nemecz, H.Hu, Z.Fourati, C.Van Renterghem, M.Delarue, P.J.Corringer. Full Mutational Mapping of Titratable Residues Helps to Identify Proton-Sensors Involved in the Control of Channel Gating in the Gloeobacter Violaceus Pentameric Ligand-Gated Ion Channel. Plos Biol. V. 15 04470 2017.
ISSN: ESSN 1545-7885
PubMed: 29281623
DOI: 10.1371/JOURNAL.PBIO.2004470