Atomistry » Sodium » PDB 6e8u-6eqv » 6efw
Atomistry »
  Sodium »
    PDB 6e8u-6eqv »
      6efw »

Sodium in PDB 6efw: Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A

Enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A

All present enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A:
4.2.1.93;

Protein crystallography data

The structure of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A, PDB code: 6efw was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.98 / 1.90
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.420, 85.420, 187.080, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A (pdb code 6efw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A, PDB code: 6efw:

Sodium binding site 1 out of 1 in 6efw

Go back to Sodium Binding Sites List in 6efw
Sodium binding site 1 out of 1 in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:40.5
occ:0.25
O A:HOH566 2.7 23.8 1.0
O A:THR74 4.3 19.2 1.0
CB A:THR74 4.6 27.2 1.0
OG1 A:THR74 4.7 20.0 1.0
C A:THR74 5.0 20.5 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A To Be Published.
Page generated: Tue Oct 8 08:24:34 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy