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Sodium in PDB 6efw: Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A

Enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A

All present enzymatic activity of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A:
4.2.1.93;

Protein crystallography data

The structure of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A, PDB code: 6efw was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.98 / 1.90
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.420, 85.420, 187.080, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A (pdb code 6efw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A, PDB code: 6efw:

Sodium binding site 1 out of 1 in 6efw

Go back to Sodium Binding Sites List in 6efw
Sodium binding site 1 out of 1 in the Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:40.5
occ:0.25
O A:HOH566 2.7 23.8 1.0
O A:THR74 4.3 19.2 1.0
CB A:THR74 4.6 27.2 1.0
OG1 A:THR74 4.7 20.0 1.0
C A:THR74 5.0 20.5 1.0

Reference:

J.Abendroth, D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of A Yjef Family Protein From Cryptococcus Neoformans Var. Grubii Serotype A To Be Published.
Page generated: Tue Oct 8 08:24:34 2024

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