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Sodium in PDB 6efk: Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide

Enzymatic activity of Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide

All present enzymatic activity of Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide:
2.3.2.27;

Protein crystallography data

The structure of Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide, PDB code: 6efk was solved by K.Basu, M.Ravalin, M.-F.Bohn, C.S.Craik, J.E.Gestwicki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.95 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.709, 70.342, 77.072, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 24.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide (pdb code 6efk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide, PDB code: 6efk:

Sodium binding site 1 out of 1 in 6efk

Go back to Sodium Binding Sites List in 6efk
Sodium binding site 1 out of 1 in the Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human Chip Tpr Domain in Complex with A 5MER Acetylated HSP70 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:30.0
occ:1.00
O A:HOH424 2.2 30.0 1.0
O A:ARG128 2.5 18.9 1.0
O A:HOH324 2.8 27.9 1.0
O A:HOH369 3.2 32.9 1.0
C A:ARG128 3.6 20.6 1.0
CA A:LEU129 3.8 15.3 1.0
N A:LEU129 4.1 18.4 1.0
CD2 A:LEU129 4.2 24.9 1.0
N A:ASN130 4.2 15.0 1.0
ND2 A:ASN130 4.3 32.2 1.0
C A:LEU129 4.4 18.3 1.0
CB A:LEU129 4.8 16.8 1.0
CG A:LEU129 4.9 19.0 1.0
CA A:ARG128 4.9 19.6 1.0

Reference:

M.Ravalin, P.Theofilas, K.Basu, K.A.Opoku-Nsiah, V.A.Assimon, D.Medina-Cleghorn, Y.F.Chen, M.F.Bohn, M.Arkin, L.T.Grinberg, C.S.Craik, J.E.Gestwicki. Specificity For Latent C Termini Links the E3 Ubiquitin Ligase Chip to Caspases. Nat.Chem.Biol. V. 15 786 2019.
ISSN: ESSN 1552-4469
PubMed: 31320752
DOI: 10.1038/S41589-019-0322-6
Page generated: Tue Oct 8 08:24:25 2024

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