Sodium in PDB 6eep: Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila

All present enzymatic activity of Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila:
5.3.1.6;

The structure of Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila, PDB code: 6eep was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.19 / 1.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	104.630, 67.930, 74.000, 90.00, 119.54, 90.00
R / Rfree (%)	15.8 / 21.6

The binding sites of Sodium atom in the Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila (pdb code 6eep). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila, PDB code: 6eep:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:35.6 occ:1.00 O B:HOH421 2.4 31.0 1.0 O A:ILE187 2.4 18.3 1.0 O A:ASN185 2.5 28.8 1.0 O B:HOH515 2.7 30.5 1.0 O A:VAL190 2.8 18.9 1.0 C A:ILE187 3.3 21.5 1.0 C A:ASN185 3.7 21.8 1.0 N A:VAL190 3.7 21.5 1.0 C A:VAL190 3.8 16.3 1.0 O B:VAL191 3.8 20.5 1.0 N A:ILE187 3.9 21.6 1.0 C A:VAL186 3.9 23.7 1.0 OE1 B:GLU192 4.0 22.2 1.0 O A:HOH467 4.0 26.3 1.0 CA A:PRO188 4.0 21.3 1.0 N A:PRO188 4.0 20.8 1.0 O B:HOH430 4.1 33.5 1.0 N A:GLY189 4.1 19.8 1.0 CA A:VAL190 4.1 17.0 1.0 CB A:VAL190 4.1 19.0 1.0 CA A:ILE187 4.2 24.8 1.0 CA A:VAL186 4.3 19.8 1.0 O A:VAL186 4.3 23.7 1.0 C A:PRO188 4.4 19.1 1.0 N A:VAL186 4.5 22.4 1.0 CA A:ASN185 4.6 18.1 1.0 C A:GLY189 4.7 25.1 1.0 CG B:ASN185 4.7 19.4 1.0 OD1 B:ASN185 4.9 26.8 1.0 ND2 B:ASN185 4.9 20.1 1.0 CB B:ASN185 4.9 23.1 1.0 CG1 A:VAL190 4.9 18.1 1.0 CD B:GLU192 4.9 26.6 1.0 C B:VAL191 4.9 24.1 1.0 CA A:GLY189 4.9 18.0 1.0 N A:VAL191 5.0 20.2 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:34.5 occ:1.00 O A:HOH459 2.3 49.2 1.0 O B:ASN185 2.5 21.7 1.0 O A:HOH431 2.5 40.0 1.0 O B:ILE187 2.5 19.3 1.0 O B:VAL190 2.7 20.1 1.0 O A:HOH467 2.8 26.3 1.0 C B:ILE187 3.4 22.2 1.0 C B:ASN185 3.6 20.4 1.0 C B:VAL190 3.7 20.1 1.0 N B:VAL190 3.7 16.0 1.0 O A:VAL191 3.9 21.2 1.0 C B:VAL186 3.9 30.3 1.0 N B:ILE187 3.9 24.7 1.0 O B:HOH515 3.9 30.5 1.0 CB B:VAL190 4.0 17.6 1.0 CA B:VAL190 4.0 15.7 1.0 OE1 A:GLU192 4.0 24.5 1.0 O A:HOH409 4.2 35.6 1.0 N B:PRO188 4.2 23.1 1.0 O B:VAL186 4.2 24.2 1.0 CA B:PRO188 4.2 20.0 1.0 N B:GLY189 4.2 17.6 1.0 CA B:VAL186 4.3 22.6 1.0 CA B:ILE187 4.3 23.4 1.0 N B:VAL186 4.4 20.0 1.0 C B:PRO188 4.5 19.9 1.0 CA B:ASN185 4.5 24.4 1.0 CG A:ASN185 4.6 22.8 1.0 C B:GLY189 4.7 18.9 1.0 CG1 B:VAL190 4.7 15.5 1.0 ND2 A:ASN185 4.8 19.2 1.0 CB A:ASN185 4.8 16.3 1.0 OD1 A:ASN185 4.9 22.1 1.0 O B:LEU184 4.9 23.6 1.0 N B:VAL191 4.9 15.8 1.0

K.N.Braverman, D.M.Dranow, S.J.Mayclin, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila To Be Published.