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Atomistry » Sodium » PDB 6e8u-6eqv » 6e9a | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Atomistry » Sodium » PDB 6e8u-6eqv » 6e9a » |
Sodium in PDB 6e9a: Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 LigandProtein crystallography data
The structure of Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 Ligand, PDB code: 6e9a
was solved by
Y.-F.Wang,
J.Agniswamy,
I.T.Weber,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Other elements in 6e9a:
The structure of Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 Ligand also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 Ligand
(pdb code 6e9a). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 Ligand, PDB code: 6e9a: Jump to Sodium binding site number: 1; 2; Sodium binding site 1 out of 2 in 6e9aGo back to Sodium Binding Sites List in 6e9a
Sodium binding site 1 out
of 2 in the Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 Ligand
Mono view Stereo pair view
Sodium binding site 2 out of 2 in 6e9aGo back to Sodium Binding Sites List in 6e9a
Sodium binding site 2 out
of 2 in the Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 Ligand
Mono view Stereo pair view
Reference:
A.K.Ghosh,
J.N.Williams,
R.Y.Ho,
H.M.Simpson,
S.I.Hattori,
H.Hayashi,
J.Agniswamy,
Y.F.Wang,
I.T.Weber,
H.Mitsuya.
Design and Synthesis of Potent Hiv-1 Protease Inhibitors Containing Bicyclic Oxazolidinone Scaffold As the P2 Ligands: Structure-Activity Studies and Biological and X-Ray Structural Studies. J. Med. Chem. V. 61 9722 2018.
Page generated: Tue Oct 8 08:22:49 2024
ISSN: ISSN 1520-4804 PubMed: 30354121 DOI: 10.1021/ACS.JMEDCHEM.8B01227 |
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