Sodium in PDB 6b9i: The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution

The structure of The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution, PDB code: 6b9i was solved by M.G.Cuypers, M.Ericson, C.Subramanian, S.W.White, C.O.Rock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.07 / 1.93
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	32.991, 54.170, 83.901, 104.71, 90.00, 107.73
R / Rfree (%)	16.6 / 20.6

The binding sites of Sodium atom in the The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution (pdb code 6b9i). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution, PDB code: 6b9i:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na306 b:52.0 occ:1.00 O3 B:GOL303 2.9 51.6 1.0 C3 B:GOL303 3.1 43.9 1.0 CE1 B:TYR140 3.7 25.6 1.0 CD1 B:TYR140 4.0 20.5 1.0 CZ B:TYR140 4.1 28.0 1.0 OH B:TYR140 4.5 32.8 1.0 O B:GLU138 4.6 28.5 1.0 C2 B:GOL303 4.7 49.5 1.0 CG B:TYR140 4.7 15.8 1.0 CE2 B:TYR140 4.7 21.6 1.0 O B:GLY139 4.8 21.0 1.0 CD2 B:TYR140 5.0 24.8 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of the Staphylococcus Aureus Fatty Acid Kinase (Fak) B1 Protein Loaded with 14-Methylhexadecanoic Acid (Anteiso C17:0) to 1.93 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na307 b:47.2 occ:1.00 O B:HOH573 2.6 43.4 1.0 OE1 B:GLU138 2.8 35.3 1.0 NH1 B:ARG131 3.2 17.2 1.0 NH2 B:ARG131 3.2 16.6 1.0 OE2 B:GLU138 3.5 33.8 1.0 CD B:GLU138 3.6 34.9 1.0 CZ B:ARG131 3.6 22.0 1.0 OH B:TYR140 4.1 32.8 1.0 CE2 B:TYR140 4.3 21.6 1.0 CZ B:TYR140 4.6 28.0 1.0 NE B:ARG131 5.0 16.3 1.0

M.G.Cuypers, C.Subramanian, J.M.Gullett, M.W.Frank, S.W.White, C.O.Rock. Acyl-Chain Selectivity and Physiological Roles Ofstaphylococcus Aureusfatty Acid-Binding Proteins. J. Biol. Chem. V. 294 38 2019.
ISSN: ESSN 1083-351X
PubMed: 30429218
DOI: 10.1074/JBC.RA118.006160