Sodium in PDB 6b91: Crystal Structure of the N-Terminal Domain of Human METTL16

All present enzymatic activity of Crystal Structure of the N-Terminal Domain of Human METTL16:
2.1.1.62;

The structure of Crystal Structure of the N-Terminal Domain of Human METTL16, PDB code: 6b91 was solved by A.Ruszkowska, M.Ruszkowski, Z.Dauter, J.A.Brown, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.51 / 1.94
Space group	I 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	190.050, 190.050, 190.050, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 21

The binding sites of Sodium atom in the Crystal Structure of the N-Terminal Domain of Human METTL16 (pdb code 6b91). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the N-Terminal Domain of Human METTL16, PDB code: 6b91:

Sodium binding site 1 out of 1 in the Crystal Structure of the N-Terminal Domain of Human METTL16


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the N-Terminal Domain of Human METTL16 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:55.9 occ:1.00 O A:HOH544 2.2 59.8 1.0 O A:HOH543 2.3 54.4 1.0 O A:HOH421 2.3 53.0 1.0 O A:GLU62 2.3 39.6 1.0 OE2 A:GLU62 3.1 45.8 1.0 C A:GLU62 3.4 36.9 1.0 CD A:GLU62 3.6 42.8 1.0 CG A:GLU62 4.0 40.0 1.0 O A:HOH492 4.2 47.4 1.0 O A:HOH522 4.2 64.0 1.0 OD1 A:ASP63 4.2 42.1 1.0 N A:ASP63 4.3 36.0 1.0 CA A:ASP63 4.3 36.4 1.0 OE1 A:GLU62 4.3 42.7 1.0 CA A:GLU62 4.3 37.5 1.0 O A:HOH438 4.7 41.9 1.0 CB A:GLU62 4.8 37.7 1.0

A.Ruszkowska, M.Ruszkowski, Z.Dauter, J.A.Brown. Structural Insights Into the Rna Methyltransferase Domain of METTL16. Sci Rep V. 8 5311 2018.
ISSN: ESSN 2045-2322
PubMed: 29593291
DOI: 10.1038/S41598-018-23608-8