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Sodium in PDB 6b7w: Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition

Enzymatic activity of Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition

All present enzymatic activity of Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition, PDB code: 6b7w was solved by M.A.B.Morais, A.F.Z.Nascimento, C.Y.Tominaga, M.Cristianini, A.A.L.Tribst, M.T.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.36 / 1.48
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.540, 78.540, 36.946, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18.7

Other elements in 6b7w:

The structure of Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition (pdb code 6b7w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition, PDB code: 6b7w:

Sodium binding site 1 out of 1 in 6b7w

Go back to Sodium Binding Sites List in 6b7w
Sodium binding site 1 out of 1 in the Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hen Egg-White Lysozyme Pre-Treated with High Pressure (600 Mpa) Under Isobaric Condition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na207

b:16.8
occ:1.00
 O A:SER78 2.2 14.7 1.0
O A:ARG91 2.3 18.4 1.0
O A:HOH304 2.4 18.3 1.0
O A:HOH360 2.4 11.9 1.0
OG A:SER90 2.4 18.1 1.0
O A:CYS82 2.5 11.1 1.0
CB A:SER90 3.2 18.5 1.0
C A:SER78 3.3 12.1 1.0
C A:ARG91 3.4 16.8 1.0
C A:CYS82 3.6 8.6 1.0
N A:ARG91 3.9 16.6 1.0
CA A:SER78 4.0 10.0 1.0
CA A:ASN83 4.0 11.6 1.0
OXT A:ACT211 4.2 37.6 1.0
C A:SER90 4.2 27.3 1.0
CB A:SER78 4.2 12.1 1.0
N A:ASN83 4.2 10.2 1.0
CA A:ARG91 4.2 13.8 1.0
CA A:SER90 4.3 22.7 1.0
N A:ASN92 4.3 14.4 1.0
O A:ARG79 4.4 18.4 1.0
N A:ARG79 4.4 12.5 1.0
C A:ARG79 4.4 19.0 1.0
N A:CYS82 4.5 11.3 1.0
CA A:ARG79 4.6 14.3 1.0
CB A:THR87 4.6 13.3 1.0
CA A:ASN92 4.6 12.9 1.0
N A:ASP84 4.7 9.6 1.0
OD1 A:ASN83 4.7 14.9 1.0
CL A:CL203 4.7 20.6 1.0
CA A:CYS82 4.7 10.8 1.0
CB A:ASN92 4.8 13.9 1.0
O A:SER90 4.9 22.7 1.0
CB A:ASN83 4.9 10.8 1.0
C A:ASN83 4.9 9.4 1.0
N A:TRP80 4.9 13.8 1.0
O A:THR87 4.9 14.8 1.0
C A:ACT211 4.9 40.4 1.0
O A:ACT211 5.0 39.2 1.0
OG1 A:THR87 5.0 13.2 1.0

Reference:

M.A.B.Morais, A.F.Z.Nascimento, C.Y.Tominaga, M.Cristianini, A.A.L.Tribst, M.T.Murakami. How High Pressure Pre-Treatments Affect the Function and Structure of Hen Egg-White Lysozyme Innov Food Sci Emerg Technol V. 47 195 2018.
DOI: 10.1016/J.IFSET.2018.02.008
Page generated: Mon Aug 18 03:44:09 2025

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