Sodium in PDB 6ax0: Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin

The structure of Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin, PDB code: 6ax0 was solved by L.R.Offermann, J.Yarbrough, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.03 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	39.435, 92.068, 39.489, 90.00, 91.79, 90.00
R / Rfree (%)	22.5 / 26.9

The binding sites of Sodium atom in the Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin (pdb code 6ax0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin, PDB code: 6ax0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:33.6 occ:1.00 O A:HOH306 2.2 60.6 1.0 O A:VAL37 2.5 42.3 1.0 O A:PRO31 2.6 42.4 1.0 O A:ILE34 2.8 40.6 1.0 O A:ASP35 3.2 49.5 1.0 C A:VAL37 3.5 41.7 1.0 C A:PRO31 3.6 40.6 1.0 C A:ASP35 3.8 47.5 1.0 CA A:ASP35 3.8 48.5 1.0 C A:ILE34 3.8 42.0 1.0 CA A:PRO31 4.0 39.4 1.0 N A:VAL37 4.2 40.8 1.0 N A:ASP35 4.3 45.6 1.0 CA A:VAL37 4.4 39.8 1.0 N A:LYS38 4.4 44.3 1.0 CA A:LYS38 4.5 47.4 1.0 CD A:LYS38 4.5 52.7 1.0 CB A:PRO31 4.8 41.0 1.0 CB A:VAL37 4.8 37.0 1.0 NZ A:LYS38 4.8 54.8 1.0 N A:LYS32 4.8 41.0 1.0 O A:THR30 4.8 36.5 1.0 N A:ASP36 4.8 45.6 1.0

Sodium binding site 2 out of 2 in the Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Pr-10 Allergen Ara H 8.01 in Complex with Epicatechin within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:31.8 occ:1.00 O B:HOH302 2.2 63.9 1.0 O B:VAL37 2.5 44.1 1.0 O B:PRO31 2.7 42.7 1.0 O B:ILE34 2.8 40.6 1.0 O B:ASP35 3.0 46.4 1.0 C B:VAL37 3.5 42.4 1.0 C B:ASP35 3.7 46.7 1.0 C B:PRO31 3.7 41.7 1.0 CA B:ASP35 3.8 49.2 1.0 C B:ILE34 3.8 42.4 1.0 CA B:PRO31 4.0 40.8 1.0 N B:VAL37 4.1 40.9 1.0 N B:ASP35 4.2 46.0 1.0 CA B:VAL37 4.3 40.4 1.0 N B:LYS38 4.4 44.7 1.0 CD B:LYS38 4.5 53.5 1.0 CA B:LYS38 4.5 48.4 1.0 NZ B:LYS38 4.7 57.0 1.0 N B:ASP36 4.7 44.6 1.0 CB B:VAL37 4.8 37.9 1.0 CB B:PRO31 4.8 41.7 1.0 O B:THR30 4.8 38.7 1.0 N B:LYS32 4.9 41.6 1.0 C B:ASP36 4.9 43.3 1.0

L.R.Offermann, J.Yarbrough, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz. Structure of Pr-10 Allergen Ara H 8.01. To Be Published.