Sodium in PDB 6awz: Structure of Pr-10 Allergen From Peanut (Ara H 8.01).

The structure of Structure of Pr-10 Allergen From Peanut (Ara H 8.01)., PDB code: 6awz was solved by L.R.Offermann, K.Majorek, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.90
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	59.869, 91.096, 55.079, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 25.6

The binding sites of Sodium atom in the Structure of Pr-10 Allergen From Peanut (Ara H 8.01). (pdb code 6awz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Pr-10 Allergen From Peanut (Ara H 8.01)., PDB code: 6awz:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Pr-10 Allergen From Peanut (Ara H 8.01).


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Pr-10 Allergen From Peanut (Ara H 8.01). within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:67.2 occ:1.00 O A:VAL37 2.2 55.8 1.0 O A:PRO31 2.4 61.1 1.0 O A:ILE34 2.5 56.6 1.0 O A:ASP35 2.7 73.3 1.0 C A:VAL37 3.3 60.1 1.0 C A:ASP35 3.3 69.9 1.0 C A:PRO31 3.5 59.2 1.0 C A:ILE34 3.5 60.9 1.0 CA A:ASP35 3.5 70.3 1.0 N A:VAL37 3.8 57.8 1.0 N A:ASP35 4.0 63.1 1.0 CA A:PRO31 4.0 57.0 1.0 CA A:VAL37 4.1 56.3 1.0 N A:LYS38 4.2 61.4 1.0 CD A:LYS38 4.3 73.3 1.0 CA A:LYS38 4.3 65.3 1.0 N A:ASP36 4.4 66.3 1.0 NZ A:LYS38 4.5 75.5 1.0 CB A:VAL37 4.6 53.1 1.0 C A:ASP36 4.6 64.6 1.0 N A:LYS32 4.7 59.2 1.0 CB A:PRO31 4.7 59.9 1.0 CA A:ILE34 4.8 58.9 1.0 OD1 A:ASP35 4.8 88.5 1.0 O A:THR30 4.8 52.6 1.0 O A:LYS32 4.8 68.9 1.0 CB A:ASP35 4.9 76.0 1.0 N A:ILE34 4.9 60.4 1.0 C A:LYS32 5.0 65.2 1.0 CA A:ASP36 5.0 66.9 1.0

Sodium binding site 2 out of 2 in the Structure of Pr-10 Allergen From Peanut (Ara H 8.01).


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Pr-10 Allergen From Peanut (Ara H 8.01). within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:49.9 occ:1.00 O B:PRO31 2.2 43.4 1.0 O B:HOH379 2.3 52.9 1.0 O B:VAL37 2.3 47.7 1.0 O B:ILE34 2.4 46.8 1.0 O B:HOH335 2.6 46.9 1.0 O B:ASP35 2.9 55.5 1.0 C B:PRO31 3.3 42.7 1.0 C B:ASP35 3.4 54.7 1.0 C B:ILE34 3.4 48.5 1.0 C B:VAL37 3.5 45.6 1.0 CA B:ASP35 3.5 52.8 1.0 CA B:PRO31 3.8 42.6 1.0 N B:ASP35 3.9 49.3 1.0 N B:VAL37 4.0 45.8 1.0 O B:HOH378 4.1 59.8 1.0 CA B:VAL37 4.3 42.9 1.0 N B:LYS32 4.4 43.8 1.0 N B:LYS38 4.4 47.0 1.0 N B:ASP36 4.5 54.5 1.0 O B:LYS32 4.5 57.5 1.0 CA B:LYS38 4.5 48.1 1.0 O B:THR30 4.6 40.7 1.0 CD B:LYS38 4.6 54.2 1.0 CB B:VAL37 4.6 40.1 1.0 CB B:PRO31 4.6 41.9 1.0 C B:LYS32 4.6 49.8 1.0 CA B:ILE34 4.7 50.7 1.0 N B:ILE34 4.7 52.4 1.0 NZ B:LYS38 4.7 58.7 1.0 CA B:LYS32 4.7 47.7 1.0 C B:ASP36 4.8 51.2 1.0 OD1 B:ASP35 4.8 60.4 1.0 CB B:ASP35 4.9 58.4 1.0

L.R.Offermann, J.Yarbrough, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz. Structure of Pr-10 Allergen Ara H 8.01. To Be Published.