Sodium in PDB 6awx: Structure of Pr-10 Allergen Ara H 8.01.

The structure of Structure of Pr-10 Allergen Ara H 8.01., PDB code: 6awx was solved by L.R.Offermann, J.Yarbrough, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	60.426, 55.143, 87.400, 90.00, 91.32, 90.00
R / Rfree (%)	21.4 / 27.1

The binding sites of Sodium atom in the Structure of Pr-10 Allergen Ara H 8.01. (pdb code 6awx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Pr-10 Allergen Ara H 8.01., PDB code: 6awx:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Pr-10 Allergen Ara H 8.01.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Pr-10 Allergen Ara H 8.01. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:58.1 occ:1.00 O A:PRO31 2.4 45.4 1.0 O A:VAL37 2.6 41.6 1.0 O A:ILE34 2.8 50.1 1.0 O A:ASP35 3.1 55.5 1.0 C A:PRO31 3.6 43.8 1.0 C A:ASP35 3.7 52.4 1.0 C A:VAL37 3.8 38.6 1.0 CA A:ASP35 3.8 54.4 1.0 C A:ILE34 3.8 50.6 1.0 CD A:LYS38 4.1 50.8 1.0 NZ A:LYS38 4.2 53.9 1.0 CA A:PRO31 4.3 39.4 1.0 N A:ASP35 4.3 51.9 1.0 CA A:LYS38 4.4 42.8 1.0 N A:LYS38 4.6 39.3 1.0 CE A:LYS38 4.6 52.1 1.0 N A:LYS32 4.6 47.3 1.0 O A:LYS32 4.6 55.1 1.0 N A:VAL37 4.7 38.0 1.0 N A:ASP36 4.7 48.3 1.0 OD1 A:ASP35 4.8 63.7 1.0 CA A:VAL37 4.8 35.6 1.0 CB A:PRO31 4.8 40.7 1.0 CA A:LYS32 4.8 53.7 1.0 C A:LYS32 4.9 54.2 1.0 C A:ASP36 5.0 42.4 1.0

Sodium binding site 2 out of 2 in the Structure of Pr-10 Allergen Ara H 8.01.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Pr-10 Allergen Ara H 8.01. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:61.3 occ:1.00 O B:PRO31 2.5 42.0 1.0 O B:VAL37 3.0 38.8 1.0 O B:ASP35 3.0 54.9 1.0 O B:ILE34 3.2 43.2 1.0 C B:PRO31 3.6 41.4 1.0 C B:ASP35 3.8 51.3 1.0 CA B:ASP35 4.0 50.0 1.0 C B:VAL37 4.2 37.9 1.0 C B:ILE34 4.2 45.4 1.0 OD1 B:ASP35 4.4 58.5 1.0 CD B:LYS38 4.4 44.3 1.0 CA B:PRO31 4.4 39.7 1.0 NZ B:LYS38 4.4 49.2 1.0 O B:LYS32 4.5 46.5 1.0 N B:LYS32 4.6 43.0 1.0 N B:ASP35 4.6 46.6 1.0 CA B:LYS32 4.7 46.6 1.0 CA B:LYS38 4.7 38.2 1.0 C B:LYS32 4.8 46.8 1.0 CE B:LYS38 4.8 47.1 1.0 N B:LYS38 4.9 37.1 1.0 CB B:PRO31 4.9 40.3 1.0 N B:ASP36 4.9 50.9 1.0

L.R.Offermann, J.Yarbrough, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz. Structure of Pr-10 Allergen Ara H 8.01. To Be Published.