Sodium in PDB 6arc: Monoclinic Eutl - Structure Determined From Merged "Group 1" Data

The structure of Monoclinic Eutl - Structure Determined From Merged "Group 1" Data, PDB code: 6arc was solved by M.C.Thompson, D.Cascio, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.80 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	118.740, 66.140, 80.140, 90.00, 108.53, 90.00
R / Rfree (%)	13.7 / 18.1

The structure of Monoclinic Eutl - Structure Determined From Merged "Group 1" Data also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Monoclinic Eutl - Structure Determined From Merged "Group 1" Data (pdb code 6arc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Monoclinic Eutl - Structure Determined From Merged "Group 1" Data, PDB code: 6arc:

Sodium binding site 1 out of 1 in the Monoclinic Eutl - Structure Determined From Merged "Group 1" Data


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Monoclinic Eutl - Structure Determined From Merged "Group 1" Data within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:19.2 occ:1.00 OD1 B:ASN74 2.3 16.7 1.0 OD1 A:ASN74 2.4 17.6 1.0 OD1 C:ASN74 2.4 15.4 1.0 O A:HOH557 2.4 29.5 1.0 O B:HOH665 2.5 28.6 1.0 O C:HOH451 2.5 31.5 1.0 CG B:ASN74 3.4 17.4 1.0 CG A:ASN74 3.4 13.8 1.0 CG C:ASN74 3.4 13.6 1.0 HA B:ASN74 3.7 17.0 1.0 O A:HOH449 3.8 30.8 1.0 HA A:ASN74 3.8 14.1 1.0 HA C:ASN74 3.9 15.3 1.0 HB3 B:ASN74 3.9 17.6 1.0 HB3 C:ASN74 3.9 15.4 1.0 O B:HOH553 4.0 27.6 1.0 O A:HOH568 4.0 31.4 1.0 HB3 A:ASN74 4.0 15.5 1.0 CB B:ASN74 4.1 14.7 1.0 CB C:ASN74 4.2 12.9 1.0 CB A:ASN74 4.2 12.9 1.0 O C:HOH397 4.3 31.4 1.0 ND2 B:ASN74 4.4 15.3 1.0 ND2 A:ASN74 4.4 13.3 1.0 ND2 C:ASN74 4.4 10.1 1.0 HD22 A:ASN74 4.4 16.0 1.0 HD22 B:ASN74 4.4 18.4 1.0 HD22 C:ASN74 4.4 12.1 1.0 CA B:ASN74 4.4 14.1 1.0 CA A:ASN74 4.5 11.7 1.0 CA C:ASN74 4.5 12.7 1.0 O B:GLY73 5.0 18.7 1.0 O B:HOH602 5.0 35.3 1.0

M.C.Thompson, D.Cascio, T.O.Yeates. Microfocus Diffraction From Different Regions of A Protein Crystal: Structural Variations and Unit-Cell Polymorphism. Acta Crystallogr D Struct V. 74 411 2018BIOL.
ISSN: ISSN 2059-7983
PubMed: 29717712
DOI: 10.1107/S2059798318003479