Sodium in PDB 6apq: Anti-Marburgvirus Nucleoprotein Single Domain Antibody B

The structure of Anti-Marburgvirus Nucleoprotein Single Domain Antibody B, PDB code: 6apq was solved by A.B.Taylor, J.A.Garza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.27 / 1.90
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	79.988, 79.988, 89.894, 90.00, 90.00, 120.00
R / Rfree (%)	18.5 / 21.7

The structure of Anti-Marburgvirus Nucleoprotein Single Domain Antibody B also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the Anti-Marburgvirus Nucleoprotein Single Domain Antibody B (pdb code 6apq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Anti-Marburgvirus Nucleoprotein Single Domain Antibody B, PDB code: 6apq:

Sodium binding site 1 out of 1 in the Anti-Marburgvirus Nucleoprotein Single Domain Antibody B


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Anti-Marburgvirus Nucleoprotein Single Domain Antibody B within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:44.6 occ:1.00 O A:HOH369 2.2 37.2 1.0 O A:ASN73 2.2 33.0 1.0 O A:HOH372 2.3 48.5 1.0 OD1 A:ASN76 2.3 28.3 1.0 O A:HOH373 2.4 38.7 1.0 O A:HOH414 3.2 49.6 1.0 C A:ASN73 3.4 30.1 1.0 CG A:ASN76 3.5 32.2 1.0 O A:GLY74 4.1 37.5 1.0 N A:ASN76 4.1 26.8 1.0 C A:GLY74 4.1 39.4 1.0 CA A:GLY74 4.3 36.2 1.0 N A:GLY74 4.3 37.6 1.0 ND2 A:ASN76 4.3 27.6 1.0 CA A:ASN73 4.4 30.4 1.0 CB A:ASN76 4.6 24.5 1.0 CA A:ASN76 4.6 23.4 1.0 N A:LYS75 4.7 34.0 1.0 O A:HOH416 4.7 39.1 1.0 CB A:ASN73 4.8 28.6 1.0 CB A:PHE29 4.8 29.8 1.0 O A:HOH402 4.8 23.0 1.0 O A:HOH361 4.9 38.1 1.0 O A:HOH433 5.0 56.8 1.0

J.A.Garza, A.B.Taylor, L.J.Sherwood, P.J.Hart, A.Hayhurst. Unveiling A Drift Resistant Cryptotope Withinmarburgvirusnucleoprotein Recognized By Llama Single-Domain Antibodies. Front Immunol V. 8 1234 2017.
ISSN: ESSN 1664-3224
PubMed: 29038656
DOI: 10.3389/FIMMU.2017.01234