Sodium in PDB 6ans: Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia

The structure of Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia, PDB code: 6ans was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.07 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.100, 134.470, 98.080, 90.00, 90.43, 90.00
R / Rfree (%)	15 / 18.8

The binding sites of Sodium atom in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia (pdb code 6ans). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 6 binding sites of Sodium where determined in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia, PDB code: 6ans:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6;

Sodium binding site 1 out of 6 in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:26.5 occ:1.00 O A:GLY82 2.4 21.6 1.0 O2 A:PO4401 2.4 21.1 1.0 O1 A:EDO404 2.4 31.4 1.0 O A:ALA83 2.4 29.7 1.0 O3 A:GOL403 2.5 29.9 1.0 C A:ALA83 3.1 21.3 1.0 C1 A:EDO404 3.4 38.7 1.0 C A:GLY82 3.4 22.7 1.0 P A:PO4401 3.6 22.1 1.0 O4 A:PO4401 3.8 24.2 1.0 CA A:ALA83 3.8 27.4 1.0 C3 A:GOL403 3.9 34.7 1.0 N A:ASP84 3.9 20.8 1.0 CB A:ALA83 3.9 23.6 1.0 NH2 A:ARG345 4.0 21.1 1.0 N A:ALA83 4.0 23.7 1.0 CA A:ASP84 4.2 21.9 1.0 O A:ILE81 4.3 26.4 1.0 OH A:TYR90 4.3 21.1 1.0 O3 A:PO4401 4.3 24.8 1.0 O2 A:GOL403 4.4 38.6 1.0 CA A:GLY82 4.5 24.6 1.0 C2 A:EDO404 4.5 35.8 1.0 C2 A:GOL403 4.6 39.6 1.0 O2 A:EDO404 4.7 32.7 1.0 O1 A:PO4401 4.7 27.0 1.0 C A:ASP84 4.8 26.0 1.0 N A:ASN85 4.8 21.2 1.0

Sodium binding site 2 out of 6 in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:30.5 occ:1.00 O1 B:EDO404 2.3 29.5 1.0 O B:GLY82 2.4 21.5 1.0 O2 B:PO4401 2.4 19.4 1.0 O B:ALA83 2.4 26.8 1.0 O1 B:GOL403 2.5 30.9 1.0 C B:ALA83 3.1 20.5 1.0 C1 B:EDO404 3.3 39.1 1.0 C B:GLY82 3.4 23.4 1.0 P B:PO4401 3.6 22.0 1.0 O4 B:PO4401 3.8 22.7 1.0 CA B:ALA83 3.8 27.3 1.0 N B:ASP84 3.9 19.8 1.0 CB B:ALA83 3.9 22.4 1.0 C1 B:GOL403 3.9 34.5 1.0 NH2 B:ARG345 3.9 24.1 1.0 N B:ALA83 4.0 22.4 1.0 CA B:ASP84 4.2 23.1 1.0 OH B:TYR90 4.2 20.0 1.0 O B:ILE81 4.2 26.6 1.0 O3 B:PO4401 4.3 25.2 1.0 O2 B:GOL403 4.4 36.8 1.0 CA B:GLY82 4.4 26.3 1.0 C2 B:EDO404 4.5 36.4 1.0 C2 B:GOL403 4.7 36.5 1.0 O2 B:EDO404 4.7 28.4 1.0 O1 B:PO4401 4.7 26.7 1.0 C B:ASP84 4.8 23.4 1.0 N B:ASN85 4.8 21.5 1.0

Sodium binding site 3 out of 6 in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ C:Na401 b:40.0 occ:1.00 O C:ASN88 2.3 27.3 1.0 O C:HOH598 2.4 35.8 1.0 O C:HOH604 2.4 37.4 1.0 O C:HOH578 2.4 25.9 1.0 O C:HOH643 2.4 26.9 1.0 O C:HOH650 2.7 39.8 1.0 C C:ASN88 3.4 33.0 1.0 O C:HOH524 3.8 44.2 1.0 CA C:LEU89 3.9 27.9 1.0 NH2 C:ARG179 4.1 34.3 1.0 N C:LEU89 4.1 27.6 1.0 O C:SER75 4.2 27.1 1.0 OH C:TYR297 4.2 21.0 1.0 O C:PRO86 4.5 27.6 1.0 CA C:HIS76 4.5 23.1 1.0 N C:TYR90 4.5 23.0 1.0 O C:HOH599 4.6 53.5 1.0 O C:HOH536 4.6 28.6 1.0 CA C:ASN88 4.6 33.1 1.0 O C:ASN85 4.7 27.0 1.0 C C:LEU89 4.8 34.0 1.0 N C:ASN88 4.8 29.0 1.0 OE2 C:GLU77 4.9 55.2 1.0 CB C:LEU89 4.9 28.1 1.0 CD2 C:TYR90 4.9 25.4 1.0 CZ C:ARG179 5.0 39.3 1.0

Sodium binding site 4 out of 6 in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ C:Na403 b:29.2 occ:1.00 O2 C:PO4402 2.3 24.9 1.0 O C:GLY82 2.3 21.7 1.0 O1 C:EDO405 2.4 31.1 1.0 O C:ALA83 2.5 30.7 1.0 O3 C:GOL404 2.5 28.4 1.0 C C:ALA83 3.2 28.0 1.0 C1 C:EDO405 3.4 36.5 1.0 C C:GLY82 3.4 22.4 1.0 P C:PO4402 3.6 24.3 1.0 O4 C:PO4402 3.8 25.4 1.0 C3 C:GOL404 3.8 29.2 1.0 CA C:ALA83 3.9 27.4 1.0 CB C:ALA83 3.9 24.9 1.0 N C:ASP84 4.0 24.7 1.0 N C:ALA83 4.0 21.2 1.0 NH2 C:ARG345 4.1 26.8 1.0 O C:ILE81 4.3 27.0 1.0 OH C:TYR90 4.3 24.6 1.0 CA C:ASP84 4.3 24.7 1.0 O2 C:GOL404 4.4 41.0 1.0 O3 C:PO4402 4.4 26.7 1.0 CA C:GLY82 4.5 27.7 1.0 C2 C:EDO405 4.5 40.6 1.0 O2 C:EDO405 4.5 32.6 1.0 C2 C:GOL404 4.6 32.8 1.0 O1 C:PO4402 4.6 26.1 1.0 C C:ASP84 4.9 25.3 1.0 N C:ASN85 5.0 22.7 1.0

Sodium binding site 5 out of 6 in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ D:Na401 b:41.1 occ:1.00 O D:ASN88 2.3 32.1 1.0 O D:HOH580 2.4 20.3 1.0 O D:HOH641 2.4 29.6 1.0 O D:HOH552 2.4 33.2 1.0 O D:HOH570 2.4 34.3 1.0 O D:HOH666 2.7 33.5 1.0 C D:ASN88 3.5 32.9 1.0 CA D:LEU89 3.9 30.0 1.0 NH2 D:ARG179 4.0 38.7 1.0 OH D:TYR297 4.1 22.6 1.0 N D:LEU89 4.1 29.8 1.0 O D:SER75 4.1 28.9 1.0 O D:PRO86 4.4 24.7 1.0 O D:HOH546 4.4 30.7 1.0 CA D:HIS76 4.5 21.5 1.0 N D:TYR90 4.5 23.7 1.0 O D:HOH601 4.6 46.5 1.0 CA D:ASN88 4.6 33.8 1.0 O D:ASN85 4.6 30.7 1.0 OE2 D:GLU77 4.7 57.4 1.0 N D:ASN88 4.8 31.9 1.0 C D:LEU89 4.8 34.2 1.0 CD2 D:TYR90 4.8 24.7 1.0 CB D:LEU89 4.9 30.3 1.0

Sodium binding site 6 out of 6 in the Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia within 5.0Å range: probe atom residue distance (Å) B Occ D:Na403 b:28.7 occ:1.00 O2 D:PO4402 2.3 24.9 1.0 O D:GLY82 2.3 22.4 1.0 O1 D:EDO405 2.4 35.5 1.0 O1 D:GOL404 2.5 30.7 1.0 O D:ALA83 2.6 27.8 1.0 C D:ALA83 3.2 27.0 1.0 C1 D:EDO405 3.2 41.7 1.0 C D:GLY82 3.4 25.4 1.0 P D:PO4402 3.5 22.7 1.0 O4 D:PO4402 3.7 28.4 1.0 C1 D:GOL404 3.8 37.0 1.0 CA D:ALA83 4.0 25.4 1.0 N D:ASP84 4.0 29.1 1.0 CB D:ALA83 4.1 25.3 1.0 N D:ALA83 4.1 21.9 1.0 NH1 D:ARG345 4.1 22.6 1.0 O3 D:PO4402 4.3 26.4 1.0 O2 D:GOL404 4.3 47.7 1.0 OH D:TYR90 4.3 24.5 1.0 O D:ILE81 4.3 23.5 1.0 CA D:ASP84 4.3 26.9 1.0 CA D:GLY82 4.5 27.6 1.0 C2 D:EDO405 4.5 41.9 1.0 C2 D:GOL404 4.6 39.0 1.0 O1 D:PO4402 4.6 30.2 1.0 O2 D:EDO405 4.6 34.6 1.0 C D:ASP84 5.0 26.1 1.0 N D:ASN85 5.0 22.8 1.0

K.Bowatte, S.L.Delker, J.Abendroth, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Putative Uncharacterized Protein From Burkholderia Cenocepacia To Be Published.