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Sodium in PDB 6agr: Structure of Hewl Co-Crystallised with Phenylethyl Alcohol

Enzymatic activity of Structure of Hewl Co-Crystallised with Phenylethyl Alcohol

All present enzymatic activity of Structure of Hewl Co-Crystallised with Phenylethyl Alcohol:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hewl Co-Crystallised with Phenylethyl Alcohol, PDB code: 6agr was solved by A.Seyedarabi, Z.Seraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.52 / 1.22
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.520, 78.520, 36.760, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.2

Other elements in 6agr:

The structure of Structure of Hewl Co-Crystallised with Phenylethyl Alcohol also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Hewl Co-Crystallised with Phenylethyl Alcohol (pdb code 6agr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hewl Co-Crystallised with Phenylethyl Alcohol, PDB code: 6agr:

Sodium binding site 1 out of 1 in 6agr

Go back to Sodium Binding Sites List in 6agr
Sodium binding site 1 out of 1 in the Structure of Hewl Co-Crystallised with Phenylethyl Alcohol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hewl Co-Crystallised with Phenylethyl Alcohol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na207

b:10.8
occ:1.00
O A:SER60 2.3 9.9 1.0
O A:CYS64 2.4 9.5 1.0
O A:ARG73 2.4 12.3 1.0
O A:HOH406 2.4 14.1 1.0
O A:HOH365 2.5 11.2 1.0
OG A:SER72 2.5 12.2 1.0
CB A:SER72 3.3 12.2 1.0
C A:CYS64 3.5 8.8 1.0
C A:ARG73 3.5 11.5 1.0
C A:SER60 3.5 9.5 1.0
CA A:ASN65 3.9 10.1 1.0
N A:ARG73 4.0 12.6 1.0
CA A:SER60 4.1 8.7 1.0
C A:SER72 4.1 12.9 1.0
N A:ASN65 4.1 9.6 1.0
CB A:SER60 4.2 8.2 1.0
CA A:ARG73 4.3 12.1 1.0
N A:ASN74 4.3 12.5 1.0
CA A:SER72 4.3 12.6 1.0
N A:CYS64 4.4 9.6 1.0
CA A:ASN74 4.5 12.3 1.0
N A:ARG61 4.6 9.6 1.0
C A:ARG61 4.6 10.8 1.0
CA A:CYS64 4.6 9.7 1.0
O A:SER72 4.6 14.8 1.0
O A:HOH390 4.6 27.9 1.0
N A:ASP66 4.7 9.1 1.0
O A:ARG61 4.7 12.7 1.0
CB A:ASN74 4.7 12.4 1.0
OD1 A:ASN65 4.7 13.1 1.0
CL A:CL205 4.7 14.3 1.0
CB A:THR69 4.7 10.4 1.0
CB A:ASN65 4.8 10.8 1.0
N A:TRP62 4.8 10.7 1.0
C A:ASN65 4.9 8.9 1.0
CA A:ARG61 4.9 10.1 1.0
OG A:SER60 5.0 8.9 1.0

Reference:

A.Seyedarabi, Z.Seraj. Structure of Hewl Co-Crystallised with Phenylethyl Alcohol To Be Published.
Page generated: Tue Dec 15 11:56:38 2020

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