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Sodium in PDB 6agn: Structure of Hewl Co-Crystallised with Cinnamaldehyde

Enzymatic activity of Structure of Hewl Co-Crystallised with Cinnamaldehyde

All present enzymatic activity of Structure of Hewl Co-Crystallised with Cinnamaldehyde:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hewl Co-Crystallised with Cinnamaldehyde, PDB code: 6agn was solved by A.Seyedarabi, Z.Seraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.10 / 1.08
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.751, 78.751, 37.100, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.4

Other elements in 6agn:

The structure of Structure of Hewl Co-Crystallised with Cinnamaldehyde also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Hewl Co-Crystallised with Cinnamaldehyde (pdb code 6agn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hewl Co-Crystallised with Cinnamaldehyde, PDB code: 6agn:

Sodium binding site 1 out of 1 in 6agn

Go back to Sodium Binding Sites List in 6agn
Sodium binding site 1 out of 1 in the Structure of Hewl Co-Crystallised with Cinnamaldehyde


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hewl Co-Crystallised with Cinnamaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:9.5
occ:1.00
O A:SER60 2.3 9.0 1.0
O A:ARG73 2.4 10.8 1.0
O A:CYS64 2.4 8.1 1.0
O A:HOH405 2.4 11.4 1.0
O A:HOH361 2.5 9.7 1.0
OG A:SER72 2.5 11.3 1.0
CB A:SER72 3.3 11.1 1.0
C A:CYS64 3.5 7.4 1.0
C A:ARG73 3.5 10.8 1.0
C A:SER60 3.5 8.3 1.0
CA A:ASN65 3.9 7.7 1.0
N A:ARG73 4.0 12.0 1.0
CA A:SER60 4.1 7.5 1.0
N A:ASN65 4.1 8.1 1.0
C A:SER72 4.2 12.1 1.0
CB A:SER60 4.2 7.9 1.0
CA A:ARG73 4.3 11.4 1.0
N A:ASN74 4.3 11.5 1.0
CA A:SER72 4.4 11.0 1.0
N A:CYS64 4.4 8.4 1.0
CA A:ASN74 4.5 10.3 1.0
CA A:CYS64 4.6 7.8 1.0
N A:ARG61 4.6 8.9 1.0
C A:ARG61 4.6 9.3 1.0
O A:HOH448 4.7 31.1 1.0
N A:ASP66 4.7 7.6 1.0
OD1 A:ASN65 4.7 10.4 1.0
CB A:ASN74 4.7 11.2 1.0
O A:ARG61 4.7 11.1 1.0
CL A:CL205 4.7 11.9 1.0
CB A:THR69 4.7 8.9 1.0
O A:SER72 4.7 13.8 1.0
CB A:ASN65 4.8 9.2 1.0
C A:ASN65 4.9 7.3 1.0
N A:TRP62 4.9 9.6 1.0
CA A:ARG61 4.9 10.1 1.0
N A:TRP63 5.0 8.1 1.0

Reference:

A.Seyedarabi, Z.Seraj. Structure of Hewl Co-Crystallised with Cinnamaldehyde To Be Published.
Page generated: Tue Dec 15 11:56:38 2020

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