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Sodium in PDB 6adf: Structure of Hewl Co-Crystallised with Temed

Enzymatic activity of Structure of Hewl Co-Crystallised with Temed

All present enzymatic activity of Structure of Hewl Co-Crystallised with Temed:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hewl Co-Crystallised with Temed, PDB code: 6adf was solved by A.Seyedarabi, Z.Seraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.49 / 1.08
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.471, 78.471, 37.020, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.6

Other elements in 6adf:

The structure of Structure of Hewl Co-Crystallised with Temed also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Hewl Co-Crystallised with Temed (pdb code 6adf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hewl Co-Crystallised with Temed, PDB code: 6adf:

Sodium binding site 1 out of 1 in 6adf

Go back to Sodium Binding Sites List in 6adf
Sodium binding site 1 out of 1 in the Structure of Hewl Co-Crystallised with Temed


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hewl Co-Crystallised with Temed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na208

b:7.7
occ:1.00
O A:SER60 2.3 8.0 1.0
O A:CYS64 2.4 6.6 1.0
O A:ARG73 2.4 9.7 1.0
O A:HOH391 2.4 9.8 1.0
O A:HOH368 2.5 7.9 1.0
OG A:SER72 2.5 9.4 1.0
CB A:SER72 3.2 8.4 1.0
C A:CYS64 3.4 6.4 1.0
C A:SER60 3.5 6.4 1.0
C A:ARG73 3.5 9.2 1.0
CA A:ASN65 3.9 7.0 1.0
N A:ARG73 3.9 10.0 1.0
CA A:SER60 4.0 6.6 1.0
N A:ASN65 4.1 6.7 1.0
C A:SER72 4.1 10.3 1.0
CB A:SER60 4.2 7.0 1.0
CA A:ARG73 4.3 9.6 1.0
CA A:SER72 4.3 8.8 1.0
N A:ASN74 4.4 9.6 1.0
N A:CYS64 4.5 6.8 1.0
O A:ARG61 4.5 9.4 1.0
C A:ARG61 4.5 8.1 1.0
N A:ARG61 4.6 6.9 1.0
CA A:CYS64 4.6 7.0 1.0
CA A:ASN74 4.6 9.2 1.0
N A:ASP66 4.6 6.4 1.0
OD1 A:ASN65 4.6 8.7 1.0
O A:HOH483 4.7 24.4 1.0
CL A:CL207 4.7 9.7 1.0
O A:SER72 4.7 10.8 1.0
CB A:THR69 4.7 7.0 1.0
CB A:ASN74 4.8 10.2 1.0
CB A:ASN65 4.8 7.6 1.0
CA A:ARG61 4.8 8.3 1.0
C A:ASN65 4.8 6.0 1.0
N A:TRP62 4.9 8.1 1.0

Reference:

A.Seyedarabi, Z.Seraj. Structure of Hewl Co-Crystallised with Temed To Be Published.
Page generated: Tue Dec 15 11:56:36 2020

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