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Sodium in PDB 6ad5: Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions

Enzymatic activity of Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions

All present enzymatic activity of Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions, PDB code: 6ad5 was solved by Z.Seraj, A.Seyedarabi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.82 / 1.75
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.939, 78.939, 36.970, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 18

Other elements in 6ad5:

The structure of Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions (pdb code 6ad5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions, PDB code: 6ad5:

Sodium binding site 1 out of 1 in 6ad5

Go back to Sodium Binding Sites List in 6ad5
Sodium binding site 1 out of 1 in the Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hewl in Complex with Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:11.0
occ:1.00
 O A:SER60 2.3 9.8 1.0
O A:CYS64 2.4 9.4 1.0
O A:HOH385 2.4 8.4 1.0
O A:HOH396 2.5 12.8 1.0
O A:ARG73 2.5 13.5 1.0
OG A:SER72 2.5 14.3 1.0
CB A:SER72 3.3 13.3 1.0
C A:CYS64 3.5 7.8 1.0
C A:SER60 3.5 10.3 1.0
C A:ARG73 3.6 13.6 1.0
CA A:ASN65 3.8 8.6 1.0
N A:ARG73 4.0 13.8 1.0
CA A:SER60 4.1 9.0 1.0
N A:ASN65 4.1 8.3 1.0
C A:SER72 4.2 17.4 1.0
CB A:SER60 4.2 8.9 1.0
CA A:ARG73 4.4 14.0 1.0
CA A:SER72 4.4 14.2 1.0
N A:ASN74 4.4 13.3 1.0
N A:CYS64 4.4 8.1 1.0
O A:ARG61 4.5 15.2 1.0
N A:ASP66 4.6 7.8 1.0
C A:ARG61 4.6 13.7 1.0
N A:ARG61 4.6 10.1 1.0
CA A:CYS64 4.6 8.8 1.0
CA A:ASN74 4.6 12.6 1.0
O A:HOH426 4.6 32.4 1.0
OD1 A:ASN65 4.6 12.0 1.0
CL A:CL203 4.7 14.8 1.0
CB A:THR69 4.7 11.3 1.0
O A:SER72 4.7 15.6 1.0
C A:ASN65 4.7 7.7 1.0
CB A:ASN74 4.8 12.2 1.0
CB A:ASN65 4.8 8.6 1.0
CA A:ARG61 4.8 12.8 1.0

Reference:

Z.Seraj, A.Seyedarabi. Crystal Structure of Hewl Bound to Temed (in the Aroma Form) After 24 Hours Under Fibrillation Conditions To Be Published.
Page generated: Tue Dec 15 11:56:36 2020

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