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Sodium in PDB 6ac2: Crystal Structure of Hewl at pH 2.2

Enzymatic activity of Crystal Structure of Hewl at pH 2.2

All present enzymatic activity of Crystal Structure of Hewl at pH 2.2:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hewl at pH 2.2, PDB code: 6ac2 was solved by A.Seyedarabi, Z.Seraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.25 / 1.23
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.130, 78.130, 36.940, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18.4

Other elements in 6ac2:

The structure of Crystal Structure of Hewl at pH 2.2 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hewl at pH 2.2 (pdb code 6ac2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hewl at pH 2.2, PDB code: 6ac2:

Sodium binding site 1 out of 1 in 6ac2

Go back to Sodium Binding Sites List in 6ac2
Sodium binding site 1 out of 1 in the Crystal Structure of Hewl at pH 2.2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hewl at pH 2.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na206

b:11.2
occ:1.00
O A:SER60 2.3 10.6 1.0
O A:ARG73 2.4 12.9 1.0
O A:HOH398 2.4 13.7 1.0
O A:CYS64 2.4 10.3 1.0
O A:HOH366 2.5 10.8 1.0
OG A:SER72 2.5 12.7 1.0
CB A:SER72 3.3 12.7 1.0
C A:CYS64 3.5 9.7 1.0
C A:ARG73 3.5 12.4 1.0
C A:SER60 3.5 10.6 1.0
CA A:ASN65 3.9 9.9 1.0
N A:ARG73 4.0 12.8 1.0
CA A:SER60 4.1 8.9 1.0
C A:SER72 4.1 14.0 1.0
N A:ASN65 4.2 10.2 1.0
CB A:SER60 4.2 9.5 1.0
CA A:ARG73 4.3 12.2 1.0
CA A:SER72 4.3 12.9 1.0
N A:ASN74 4.3 12.0 1.0
N A:CYS64 4.5 10.5 1.0
CA A:ASN74 4.5 12.6 1.0
C A:ARG61 4.6 11.0 1.0
N A:ARG61 4.6 10.1 1.0
CA A:CYS64 4.6 10.6 1.0
O A:ARG61 4.6 12.8 1.0
O A:SER72 4.6 15.0 1.0
O A:HOH424 4.6 29.2 1.0
N A:ASP66 4.6 9.3 1.0
OD1 A:ASN65 4.7 13.4 1.0
CL A:CL205 4.7 13.9 1.0
CB A:ASN74 4.7 13.0 1.0
CB A:THR69 4.7 10.7 1.0
CA A:ARG61 4.8 11.7 1.0
CB A:ASN65 4.8 11.0 1.0
C A:ASN65 4.8 9.1 1.0
N A:TRP62 4.9 10.9 1.0
O A:HOH430 5.0 17.9 1.0

Reference:

A.Seyedarabi, Z.Seraj. Crystal Structure of Hewl at pH 2.2 To Be Published.
Page generated: Tue Oct 8 01:47:29 2024

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