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Sodium in PDB 6abz: Crystal Structure of Hewl in Deionized Water

Enzymatic activity of Crystal Structure of Hewl in Deionized Water

All present enzymatic activity of Crystal Structure of Hewl in Deionized Water:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hewl in Deionized Water, PDB code: 6abz was solved by A.Seyedarabi, Z.Seraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.25 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.139, 78.139, 37.140, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 23.4

Other elements in 6abz:

The structure of Crystal Structure of Hewl in Deionized Water also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hewl in Deionized Water (pdb code 6abz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hewl in Deionized Water, PDB code: 6abz:

Sodium binding site 1 out of 1 in 6abz

Go back to Sodium Binding Sites List in 6abz
Sodium binding site 1 out of 1 in the Crystal Structure of Hewl in Deionized Water


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hewl in Deionized Water within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:10.4
occ:1.00
O A:SER60 2.3 9.5 1.0
O A:HOH381 2.4 8.4 1.0
O A:HOH402 2.5 8.8 1.0
OG A:SER72 2.5 14.2 1.0
O A:ARG73 2.5 10.7 1.0
O A:CYS64 2.5 6.6 1.0
CB A:SER72 3.2 14.7 1.0
C A:SER60 3.5 9.8 1.0
C A:ARG73 3.6 12.5 1.0
C A:CYS64 3.6 8.1 1.0
CA A:ASN65 3.9 8.3 1.0
N A:ARG73 4.0 13.2 1.0
CA A:SER60 4.1 8.8 1.0
C A:SER72 4.1 14.1 1.0
CB A:SER60 4.2 8.4 1.0
N A:ASN65 4.2 7.8 1.0
CA A:SER72 4.3 14.4 1.0
CA A:ARG73 4.4 13.4 1.0
N A:ASN74 4.4 11.2 1.0
N A:ASP66 4.6 8.7 1.0
CL A:CL204 4.6 16.2 1.0
N A:ARG61 4.6 10.4 1.0
C A:ARG61 4.6 12.7 1.0
N A:CYS64 4.6 9.2 1.0
OD1 A:ASN65 4.6 10.5 1.0
CB A:THR69 4.6 11.3 1.0
O A:SER72 4.7 12.3 1.0
CA A:ASN74 4.7 11.7 1.0
O A:ARG61 4.7 13.2 1.0
CB A:ASN65 4.7 9.0 1.0
C A:ASN65 4.8 7.5 1.0
CA A:CYS64 4.8 8.5 1.0
CB A:ASN74 4.9 12.0 1.0
CA A:ARG61 4.9 13.3 1.0
N A:TRP62 4.9 11.7 1.0
OG1 A:THR69 4.9 10.4 1.0
O A:HOH457 4.9 22.9 1.0
OG A:SER60 5.0 8.5 1.0
O A:THR69 5.0 9.8 1.0

Reference:

A.Seyedarabi, Z.Seraj. Crystal Structure of Hewl in Deionized Water To Be Published.
Page generated: Tue Dec 15 11:56:33 2020

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