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Sodium in PDB 6abn: Crystal Structure of Hewl at pH 8.6

Enzymatic activity of Crystal Structure of Hewl at pH 8.6

All present enzymatic activity of Crystal Structure of Hewl at pH 8.6:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hewl at pH 8.6, PDB code: 6abn was solved by A.Seyedarabi, Z.Seraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.27 / 1.17
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.170, 78.170, 36.970, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 19.6

Other elements in 6abn:

The structure of Crystal Structure of Hewl at pH 8.6 also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hewl at pH 8.6 (pdb code 6abn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hewl at pH 8.6, PDB code: 6abn:

Sodium binding site 1 out of 1 in 6abn

Go back to Sodium Binding Sites List in 6abn
Sodium binding site 1 out of 1 in the Crystal Structure of Hewl at pH 8.6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hewl at pH 8.6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:4.8
occ:1.00
O A:SER60 2.3 4.4 1.0
O A:CYS64 2.4 4.1 1.0
O A:HOH410 2.4 6.2 1.0
O A:ARG73 2.4 7.1 1.0
O A:HOH378 2.4 4.0 1.0
OG A:SER72 2.5 6.5 1.0
CB A:SER72 3.3 6.4 1.0
C A:CYS64 3.4 3.4 1.0
C A:SER60 3.5 3.8 1.0
C A:ARG73 3.5 6.2 1.0
CA A:ASN65 3.9 3.3 1.0
N A:ARG73 4.0 7.4 1.0
CA A:SER60 4.1 3.4 1.0
C A:SER72 4.1 8.2 1.0
N A:ASN65 4.1 3.5 1.0
CB A:SER60 4.2 3.8 1.0
CA A:SER72 4.3 6.9 1.0
CA A:ARG73 4.3 7.4 1.0
N A:ASN74 4.4 6.6 1.0
N A:CYS64 4.4 4.3 1.0
C A:ARG61 4.5 6.2 1.0
N A:ARG61 4.6 4.6 1.0
O A:ARG61 4.6 7.7 1.0
CA A:CYS64 4.6 3.7 1.0
N A:ASP66 4.6 2.8 1.0
CA A:ASN74 4.6 6.9 1.0
O A:SER72 4.6 8.3 1.0
CL A:CL203 4.7 6.4 1.0
OD1 A:ASN65 4.7 5.4 1.0
CB A:THR69 4.7 4.5 1.0
O A:HOH493 4.7 18.0 1.0
CB A:ASN74 4.8 6.4 1.0
CA A:ARG61 4.8 6.8 1.0
C A:ASN65 4.8 2.7 1.0
CB A:ASN65 4.8 3.9 1.0
N A:TRP62 4.9 6.7 1.0

Reference:

A.Seyedarabi, Z.Seraj. Structure of Hewl at pH 8.6 To Be Published.
Page generated: Tue Dec 15 11:56:33 2020

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