Atomistry » Sodium » PDB 5zwy-6agr » 6a83
Atomistry »
  Sodium »
    PDB 5zwy-6agr »
      6a83 »

Sodium in PDB 6a83: Crystal Structure of the C-Terminal Periplasmic Domain of Eceptc From Escherichia Coli Complex with Zn

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Periplasmic Domain of Eceptc From Escherichia Coli Complex with Zn, PDB code: 6a83 was solved by Y.Q.Zhao, Y.J.Gu, W.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.69 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.568, 103.568, 122.294, 90.00, 90.00, 120.00
R / Rfree (%) 21.2 / 23.7

Other elements in 6a83:

The structure of Crystal Structure of the C-Terminal Periplasmic Domain of Eceptc From Escherichia Coli Complex with Zn also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the C-Terminal Periplasmic Domain of Eceptc From Escherichia Coli Complex with Zn (pdb code 6a83). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the C-Terminal Periplasmic Domain of Eceptc From Escherichia Coli Complex with Zn, PDB code: 6a83:

Sodium binding site 1 out of 1 in 6a83

Go back to Sodium Binding Sites List in 6a83
Sodium binding site 1 out of 1 in the Crystal Structure of the C-Terminal Periplasmic Domain of Eceptc From Escherichia Coli Complex with Zn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the C-Terminal Periplasmic Domain of Eceptc From Escherichia Coli Complex with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na602

b:30.0
occ:1.00
O A:GLN294 1.8 60.2 1.0
O A:THR297 2.0 57.0 1.0
O A:ALA299 2.4 48.6 1.0
O A:HOH716 2.5 41.3 1.0
O A:ALA518 2.6 55.6 1.0
O A:HOH708 2.7 46.4 1.0
C A:GLN294 3.0 49.9 1.0
C A:THR297 3.0 50.7 1.0
N A:ALA299 3.5 56.0 1.0
C A:ALA299 3.5 54.3 1.0
C A:PHE298 3.5 57.5 1.0
CA A:PHE298 3.7 51.4 1.0
CA A:GLN294 3.7 41.1 1.0
C A:ALA518 3.8 56.5 1.0
N A:PHE298 3.8 50.2 1.0
N A:THR297 4.0 43.9 1.0
O A:PHE298 4.0 61.5 1.0
N A:ALA295 4.0 39.2 1.0
CA A:ALA299 4.1 55.6 1.0
CA A:THR297 4.1 48.7 1.0
OG1 A:THR297 4.3 54.8 1.0
CA A:ALA295 4.3 45.0 1.0
C A:ALA295 4.3 53.6 1.0
CB A:GLN294 4.3 46.0 1.0
O A:ALA295 4.3 50.3 1.0
CG2 A:ILE521 4.6 48.3 1.0
CA A:ALA518 4.6 52.0 1.0
N A:ASN300 4.6 49.2 1.0
N A:GLU519 4.7 43.2 1.0
CA A:GLU519 4.8 54.5 1.0
N A:LEU296 4.8 51.4 1.0
CB A:THR297 4.8 57.7 1.0
CB A:ALA299 4.9 54.3 1.0

Reference:

Y.Zhao, Q.Meng, Y.Lai, L.Wang, D.Zhou, C.Dou, Y.Gu, C.Nie, Y.Wei, W.Cheng. Structural and Mechanistic Insights Into Polymyxin Resistance Mediated By Eptc Originating From Escherichia Coli. Febs J. V. 286 750 2019.
ISSN: ISSN 1742-4658
PubMed: 30537137
DOI: 10.1111/FEBS.14719
Page generated: Tue Dec 15 11:56:19 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy