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Sodium in PDB 6a3c: Mvm Nes Mutant NM12 in Complex with CRM1-Ran-RANBP1

Protein crystallography data

The structure of Mvm Nes Mutant NM12 in Complex with CRM1-Ran-RANBP1, PDB code: 6a3c was solved by Q.Sun, Y.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.100, 106.100, 303.825, 90.00, 90.00, 90.00
R / Rfree (%) 22 / 26.6

Other elements in 6a3c:

The structure of Mvm Nes Mutant NM12 in Complex with CRM1-Ran-RANBP1 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Mvm Nes Mutant NM12 in Complex with CRM1-Ran-RANBP1 (pdb code 6a3c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mvm Nes Mutant NM12 in Complex with CRM1-Ran-RANBP1, PDB code: 6a3c:

Sodium binding site 1 out of 1 in 6a3c

Go back to Sodium Binding Sites List in 6a3c
Sodium binding site 1 out of 1 in the Mvm Nes Mutant NM12 in Complex with CRM1-Ran-RANBP1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mvm Nes Mutant NM12 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na1104

b:74.3
occ:1.00
OH C:TYR465 2.3 54.3 1.0
OH C:TYR557 2.6 58.5 1.0
O C:TRP510 3.0 59.4 1.0
CZ C:TYR465 3.3 55.1 1.0
N C:SER514 3.3 60.2 1.0
C C:GLY513 3.5 60.7 1.0
CZ C:TYR557 3.5 60.3 1.0
CE1 C:TYR465 3.5 55.3 1.0
CE2 C:TYR557 3.6 59.7 1.0
CA C:SER514 3.7 59.9 1.0
CA C:GLY513 3.9 60.3 1.0
NE2 C:GLN561 3.9 60.6 1.0
O C:GLY513 3.9 59.9 1.0
CG C:GLN561 4.0 60.9 1.0
CD C:GLN561 4.0 60.5 1.0
C C:TRP510 4.0 59.3 1.0
CB C:SER514 4.1 58.7 1.0
CA C:TRP510 4.2 59.2 1.0
CE2 C:TYR465 4.5 54.6 1.0
N C:GLY513 4.6 60.1 1.0
OE1 C:GLN561 4.7 61.6 1.0
CG C:PRO438 4.7 67.7 1.0
CB C:TRP510 4.8 59.3 1.0
CE1 C:TYR557 4.8 59.6 1.0
CD1 C:TYR465 4.9 55.0 1.0
CD2 C:TYR557 5.0 59.4 1.0

Reference:

Q.Sun, Y.Li. Mvm NS2 Nes in Complex with CRM1-Ran-RANBP1 To Be Published.
Page generated: Tue Dec 15 11:55:54 2020

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