Sodium in PDB 6a3b: Mvm Nes Mutant NM13 in Complex with CRM1-Ran-RANBP1

The structure of Mvm Nes Mutant NM13 in Complex with CRM1-Ran-RANBP1, PDB code: 6a3b was solved by Q.Sun, Y.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.01 / 2.51
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	106.362, 106.362, 303.858, 90.00, 90.00, 90.00
R / Rfree (%)	21.3 / 25.4

The structure of Mvm Nes Mutant NM13 in Complex with CRM1-Ran-RANBP1 also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the Mvm Nes Mutant NM13 in Complex with CRM1-Ran-RANBP1 (pdb code 6a3b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mvm Nes Mutant NM13 in Complex with CRM1-Ran-RANBP1, PDB code: 6a3b:

Sodium binding site 1 out of 1 in the Mvm Nes Mutant NM13 in Complex with CRM1-Ran-RANBP1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mvm Nes Mutant NM13 in Complex with CRM1-Ran-RANBP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1103 b:66.8 occ:1.00 OH C:TYR465 2.6 53.6 1.0 OH C:TYR557 2.6 57.1 1.0 O C:TRP510 3.0 60.4 1.0 N C:SER514 3.4 58.6 1.0 C C:GLY513 3.5 59.0 1.0 CZ C:TYR465 3.5 53.0 1.0 CZ C:TYR557 3.5 57.1 1.0 CE1 C:TYR465 3.6 53.8 1.0 CE2 C:TYR557 3.6 57.2 1.0 CA C:SER514 3.8 57.5 1.0 NE2 C:GLN561 3.8 58.4 1.0 CA C:GLY513 3.8 59.2 1.0 O C:GLY513 3.9 58.7 1.0 CD C:GLN561 4.0 57.0 1.0 C C:TRP510 4.0 58.7 1.0 CG C:GLN561 4.0 58.5 1.0 CB C:SER514 4.2 57.4 1.0 CA C:TRP510 4.2 58.3 1.0 N C:GLY513 4.5 59.1 1.0 CG C:PRO438 4.6 62.5 1.0 OE1 C:GLN561 4.7 57.2 1.0 CE2 C:TYR465 4.7 52.5 1.0 CB C:TRP510 4.8 57.9 1.0 CE1 C:TYR557 4.8 57.1 1.0 CD1 C:TYR465 4.9 53.8 1.0 CD2 C:TYR557 5.0 58.1 1.0

Q.Sun, Y.Li. MM12 in Complex with CRM1-Ran-RANBP1 To Be Published.