Sodium in PDB 6a31: Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution

All present enzymatic activity of Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution:
3.1.1.29;

The structure of Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution, PDB code: 6a31 was solved by H.R.Bairagya, P.Sharma, P.K.Singh, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.60 / 2.19
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	34.290, 58.750, 109.210, 90.00, 90.00, 90.00
R / Rfree (%)	17.4 / 23.4

The binding sites of Sodium atom in the Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution (pdb code 6a31). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution, PDB code: 6a31:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:56.5 occ:1.00 O A:HOH310 2.3 48.0 1.0 O A:HOH486 2.9 76.6 1.0 N A:LEU40 3.3 31.6 1.0 O A:HOH386 3.6 50.0 1.0 CB A:LEU40 3.9 30.1 1.0 CA A:THR39 4.0 32.7 1.0 O A:LEU40 4.0 31.1 1.0 NA A:NA202 4.0 54.0 1.0 O A:HOH416 4.0 34.8 1.0 O A:ILE38 4.1 37.6 1.0 CA A:LEU40 4.1 30.3 1.0 C A:THR39 4.1 32.9 1.0 CG A:LEU40 4.2 29.1 1.0 O A:HOH457 4.3 59.4 1.0 CG2 A:THR39 4.5 28.9 1.0 C A:LEU40 4.5 33.2 1.0 O A:HOH389 4.5 74.2 1.0 CD1 A:LEU40 4.8 29.7 1.0 CB A:THR39 4.8 31.7 1.0 C A:ILE38 4.9 33.2 1.0 N A:THR39 4.9 30.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:54.0 occ:1.00 O A:HOH389 2.0 74.2 1.0 O A:HOH379 2.1 0.8 1.0 O A:HOH310 2.7 48.0 1.0 OD1 A:ASP34 2.9 41.0 1.0 O A:HOH416 2.9 34.8 1.0 O A:ILE38 3.4 37.6 1.0 C A:ILE38 3.8 33.2 1.0 CG A:ASP34 3.9 45.4 1.0 C A:GLY37 3.9 28.2 1.0 N A:ILE38 3.9 30.7 1.0 CA A:GLY37 4.0 26.5 1.0 CA A:ASP34 4.0 38.1 1.0 O A:ALA33 4.0 29.8 1.0 NA A:NA201 4.0 56.5 1.0 CB A:ASP34 4.3 43.6 1.0 N A:THR39 4.4 30.4 1.0 C A:ALA33 4.4 31.3 1.0 CA A:THR39 4.4 32.7 1.0 O A:GLY37 4.5 33.0 1.0 N A:ASP34 4.5 36.8 1.0 OG1 A:THR39 4.6 30.2 1.0 CA A:ILE38 4.6 32.7 1.0 N A:GLY37 4.7 25.4 1.0 O A:HOH386 4.8 50.0 1.0 O A:ASP34 4.9 38.3 1.0 OD2 A:ASP34 4.9 41.3 1.0 C A:ASP34 5.0 41.7 1.0

H.R.Bairagya, P.Sharma, P.K.Singh, S.Sharma, T.P.Singh. Crystal Structure of Na+ Bound Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 2.19 A Resolution To Be Published.