Atomistry » Sodium » PDB 5j29-5ji5
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Sodium in PDB, part 151 (files: 6001-6040), PDB 5j29-5ji5

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 6001-6040 (PDB 5j29-5ji5).
  1. 5j29 (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with A:A Mismatch at the Primer Terminus
    Other atoms: Mg (2);
  2. 5j2a (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with A:C Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (2);
  3. 5j2b (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with A:C Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (2);
  4. 5j2c (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with C:A Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (4);
  5. 5j2d (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (4);
  6. 5j2e (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (5);
  7. 5j2f (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with G:A Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (5);
  8. 5j2g (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with G:G Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (5);
  9. 5j2h (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with G:T Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (5);
  10. 5j2i (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with T:C Mismatch at the Primer Terminus
    Other atoms: Mg (2);
  11. 5j2j (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with T:G Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (4);
  12. 5j2k (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with T:T Mismatch at the Primer Terminus
    Other atoms: Mg (2); Cl (4);
  13. 5j2z (Na: 2) - Prv UL37 N-Terminal Half (R2 Mutant)
    Other atoms: Ca (10); Cl (3);
  14. 5j48 (Na: 2) - Pkg I'S Carboyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with 8-Pcpt-Cgmp
    Other atoms: Ca (1); Cl (2);
  15. 5j4h (Na: 2) - Structure of Humanised Rada-Mutant HUMRADA22F in Complex with Indole- 6-Carboxylic Acid
    Other atoms: Ca (1);
  16. 5j4k (Na: 2) - Structure of Humanised Rada-Mutant HUMRADA22F in Complex with 1- Indane-6-Carboxylic Acid
    Other atoms: Ca (1);
  17. 5j5d (Na: 2) - Crystal Structure of Dihydrodipicolinate Synthase From Mycobacterium Tuberculosis in Complex with Alpha-Ketopimelic Acid
  18. 5j5p (Na: 2) - Amp-Pnp-Stabilized Atpase Domain of Topoisomerase IV From Streptococcus Pneumoniae, Complex Type I
    Other atoms: Mg (4);
  19. 5j6h (Na: 2) - Recognition of the Mhc Class Ib Molecule H2-Q10 By the Natural Killer Cell Receptor LY49C
  20. 5j72 (Na: 3) - CWP6 From Clostridium Difficile
    Other atoms: Zn (2); Ca (6); Cl (5);
  21. 5j7z (Na: 2) - Crystal Structure of Endoglycoceramidase I From Rhodococ-Cus Equi in Complex with GM1
  22. 5j8c (Na: 2) - Human Mof C316S, E350Q Crystal Structure
    Other atoms: Cl (2); Zn (1);
  23. 5jaw (Na: 25) - Structure of A Beta Galactosidase with Inhibitor
  24. 5jax (Na: 1) - Pkg I'S Carboyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with 8-Br-Cgmp
    Other atoms: Br (1); Ca (2);
  25. 5jcb (Na: 2) - Microtubule Depolymerizing Agent Podophyllotoxin Derivative YJTSF1
    Other atoms: Mg (7); Ca (2);
  26. 5jda (Na: 1) - Bacillus Cereus Coth Kinase Plus MG2+/Amp
    Other atoms: Mg (5);
  27. 5jdg (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 2.5 Mm Na+ and 0.1MM CA2+
    Other atoms: Ca (1);
  28. 5jdh (Na: 1) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 10 Mm Na+ and 10MM CA2+
    Other atoms: Cl (1); Ca (3);
  29. 5jdm (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 2.5 Mm Na+ and 0.1MM SR2+
    Other atoms: Sr (1);
  30. 5jdn (Na: 1) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 10 Mm Na+ and 10MM SR2+
    Other atoms: Sr (2);
  31. 5jdq (Na: 3) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 100 Mm Na+ and 10MM SR2+
    Other atoms: Sr (1); Cl (2);
  32. 5jds (Na: 2) - Crystal Structure of Pd-L1 Complexed with A Nanobody at 1.7 Angstron Resolution
    Other atoms: Cl (3);
  33. 5jea (Na: 4) - Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna
    Other atoms: Zn (1);
  34. 5jei (Na: 1) - Crystal Structure of the GLUA2 Lbd in Complex with Fw
    Other atoms: F (1);
  35. 5jen (Na: 6) - Crystal Structure of the Anti-Sigma Factor Rsiv Bound to Lysozyme
    Other atoms: Cl (2);
  36. 5jfd (Na: 2) - Thrombin in Complex with (S)-N-(2-(Aminomethyl)-5-Chlorobenzyl)-1- ((Benzylsulfonyl)-D-Arginyl)Pyrrolidine-2-Carboxamide
    Other atoms: Cl (1);
  37. 5jfp (Na: 1) - Hiv-1 Wild Type Protease with Grl-097-13A (A Adamantane P1-Ligand with Bis-Thf in P2 and Isobutylamine in P1')
    Other atoms: Cl (2);
  38. 5jg1 (Na: 3) - Hiv-1 Wild Type Protease with Grl-031-14A (A Adamantane P1-Ligand with Tetrahydropyrano-Tetrahydrofuran in P2 and Isobutylamine in P1')
    Other atoms: Cl (2);
  39. 5jgl (Na: 2) - Crystal Structure of Gtma in Complex with S-Adenosylmethionine
  40. 5ji5 (Na: 1) - Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum
    Other atoms: Zn (1);
Page generated: Fri Dec 24 09:48:51 2021

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