Sodium in PDB, part 151 (files: 6001-6040),
PDB 5j2d-5jim
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 6001-6040 (PDB 5j2d-5jim).
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5j2d (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with C:C Mismatch at the Primer Terminus
Other atoms:
Mg (2);
Cl (4);
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5j2e (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with C:T Mismatch at the Primer Terminus
Other atoms:
Mg (2);
Cl (5);
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5j2f (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with G:A Mismatch at the Primer Terminus
Other atoms:
Mg (2);
Cl (5);
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5j2g (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with G:G Mismatch at the Primer Terminus
Other atoms:
Mg (2);
Cl (5);
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5j2h (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with G:T Mismatch at the Primer Terminus
Other atoms:
Mg (2);
Cl (5);
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5j2i (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with T:C Mismatch at the Primer Terminus
Other atoms:
Mg (2);
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5j2j (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with T:G Mismatch at the Primer Terminus
Other atoms:
Mg (2);
Cl (4);
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5j2k (Na: 2) - Ternary Complex Crystal Structure of Dna Polymerase Beta with T:T Mismatch at the Primer Terminus
Other atoms:
Mg (2);
Cl (4);
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5j2z (Na: 2) - Prv UL37 N-Terminal Half (R2 Mutant)
Other atoms:
Ca (10);
Cl (3);
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5j48 (Na: 2) - Pkg I'S Carboyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with 8-Pcpt-Cgmp
Other atoms:
Ca (1);
Cl (2);
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5j4h (Na: 2) - Structure of Humanised Rada-Mutant HUMRADA22F in Complex with Indole- 6-Carboxylic Acid
Other atoms:
Ca (1);
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5j4k (Na: 2) - Structure of Humanised Rada-Mutant HUMRADA22F in Complex with 1- Indane-6-Carboxylic Acid
Other atoms:
Ca (1);
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5j5d (Na: 2) - Crystal Structure of Dihydrodipicolinate Synthase From Mycobacterium Tuberculosis in Complex with Alpha-Ketopimelic Acid
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5j5p (Na: 2) - Amp-Pnp-Stabilized Atpase Domain of Topoisomerase IV From Streptococcus Pneumoniae, Complex Type I
Other atoms:
Mg (4);
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5j6h (Na: 2) - Recognition of the Mhc Class Ib Molecule H2-Q10 By the Natural Killer Cell Receptor LY49C
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5j72 (Na: 3) - CWP6 From Clostridium Difficile
Other atoms:
Zn (2);
Ca (6);
Cl (5);
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5j7z (Na: 2) - Crystal Structure of Endoglycoceramidase I From Rhodococ-Cus Equi in Complex with GM1
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5j8c (Na: 2) - Human Mof C316S, E350Q Crystal Structure
Other atoms:
Cl (2);
Zn (1);
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5jaw (Na: 25) - Structure of A Beta Galactosidase with Inhibitor
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5jax (Na: 1) - Pkg I'S Carboyl Terminal Cyclic Nucleotide Binding Domain (Cnb-B) in A Complex with 8-Br-Cgmp
Other atoms:
Br (1);
Ca (2);
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5jcb (Na: 2) - Microtubule Depolymerizing Agent Podophyllotoxin Derivative YJTSF1
Other atoms:
Mg (7);
Ca (2);
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5jda (Na: 1) - Bacillus Cereus Coth Kinase Plus MG2+/Amp
Other atoms:
Mg (5);
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5jdg (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 2.5 Mm Na+ and 0.1MM CA2+
Other atoms:
Ca (1);
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5jdh (Na: 1) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 10 Mm Na+ and 10MM CA2+
Other atoms:
Cl (1);
Ca (3);
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5jdm (Na: 2) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 2.5 Mm Na+ and 0.1MM SR2+
Other atoms:
Sr (1);
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5jdn (Na: 1) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 10 Mm Na+ and 10MM SR2+
Other atoms:
Sr (2);
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5jdq (Na: 3) - Structural Mechanisms of Extracellular Ion Exchange and Induced Binding-Site Occlusion in the Sodium-Calcium Exchanger NCX_MJ Soaked with 100 Mm Na+ and 10MM SR2+
Other atoms:
Sr (1);
Cl (2);
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5jds (Na: 2) - Crystal Structure of Pd-L1 Complexed with A Nanobody at 1.7 Angstron Resolution
Other atoms:
Cl (3);
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5jea (Na: 4) - Structure of A Cytoplasmic 11-Subunit Rna Exosome Complex Including SKI7, Bound to Rna
Other atoms:
Zn (1);
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5jei (Na: 1) - Crystal Structure of the GLUA2 Lbd in Complex with Fw
Other atoms:
F (1);
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5jen (Na: 6) - Crystal Structure of the Anti-Sigma Factor Rsiv Bound to Lysozyme
Other atoms:
Cl (2);
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5jfd (Na: 2) - Thrombin in Complex with (S)-N-(2-(Aminomethyl)-5-Chlorobenzyl)-1- ((Benzylsulfonyl)-D-Arginyl)Pyrrolidine-2-Carboxamide
Other atoms:
Cl (1);
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5jfp (Na: 1) - Hiv-1 Wild Type Protease with Grl-097-13A (A Adamantane P1-Ligand with Bis-Thf in P2 and Isobutylamine in P1')
Other atoms:
Cl (2);
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5jg1 (Na: 3) - Hiv-1 Wild Type Protease with Grl-031-14A (A Adamantane P1-Ligand with Tetrahydropyrano-Tetrahydrofuran in P2 and Isobutylamine in P1')
Other atoms:
Cl (2);
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5jgl (Na: 2) - Crystal Structure of Gtma in Complex with S-Adenosylmethionine
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5ji5 (Na: 1) - Crystal Structure of A Histone Deacetylase Superfamily Protein From Burkholderia Phymatumphymatum
Other atoms:
Zn (1);
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5jid (Na: 1) - Crystal Structure of Human Transthyretin in Complex with Perfluorooctanoic Acid (Pfoa)
Other atoms:
F (30);
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5jif (Na: 2) - Crystal Structure of Mouse Hepatitis Virus Strain Dvim Hemagglutinin- Esterase
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5jil (Na: 1) - Crystal Structure of Rat Coronavirus Strain New-Jersey Hemagglutinin- Esterase in Complex with 4N-Acetyl Sialic Acid
Other atoms:
Zn (1);
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5jim (Na: 1) - Crystal Structure of Human Transthyretin in Complex with Perfluoroktansulfonsyra (Pfos)
Other atoms:
F (34);
Page generated: Sun Dec 15 11:38:26 2024
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