Sodium in PDB 5zu5: Crystal Structure of A Full Length Alginate Lyase with Cbm Domain

The structure of Crystal Structure of A Full Length Alginate Lyase with Cbm Domain, PDB code: 5zu5 was solved by W.Liu, Q.Lyu, Z.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.272, 78.421, 112.303, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.6

The binding sites of Sodium atom in the Crystal Structure of A Full Length Alginate Lyase with Cbm Domain (pdb code 5zu5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Full Length Alginate Lyase with Cbm Domain, PDB code: 5zu5:

Sodium binding site 1 out of 1 in the Crystal Structure of A Full Length Alginate Lyase with Cbm Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Full Length Alginate Lyase with Cbm Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:11.3 occ:1.00 O A:ARG30 2.3 13.0 1.0 O A:ASP35 2.3 13.9 1.0 OG1 A:THR38 2.4 14.7 1.0 O A:THR133 2.4 11.3 1.0 O A:THR38 2.6 13.4 1.0 OD1 A:ASP33 2.6 16.1 1.0 C A:THR38 3.3 13.1 1.0 O A:HOH771 3.4 17.0 1.0 C A:ASP35 3.5 15.2 1.0 C A:ARG30 3.5 12.6 1.0 C A:THR133 3.5 9.4 1.0 CG A:ASP33 3.5 15.2 1.0 CB A:THR38 3.6 15.0 1.0 OD2 A:ASP33 3.8 16.1 1.0 CA A:THR38 3.8 13.9 1.0 N A:THR38 3.9 12.9 1.0 CA A:THR133 4.0 9.5 1.0 CB A:ASP35 4.0 16.8 1.0 N A:ASP35 4.1 16.4 1.0 CA A:ASP35 4.1 16.4 1.0 CA A:ARG30 4.2 12.5 1.0 N A:ARG39 4.2 13.0 1.0 CB A:THR133 4.3 9.5 1.0 CB A:ARG30 4.3 12.4 1.0 N A:LEU31 4.5 12.6 1.0 N A:LEU36 4.6 15.3 1.0 CA A:ARG39 4.6 12.5 1.0 N A:GLY134 4.7 9.3 1.0 CA A:LEU31 4.8 13.2 1.0 CG2 A:THR38 4.8 16.0 1.0 CA A:LEU36 4.9 14.2 1.0 N A:ASP33 4.9 14.7 1.0 CB A:ASP33 4.9 14.8 1.0 C A:LEU31 5.0 13.0 1.0 CG A:ASP35 5.0 18.8 1.0

Q.Lyu, K.Zhang, Q.Zhu, Z.Li, Y.Liu, E.Fitzek, T.Yohe, L.Zhao, W.Li, T.Liu, Y.Yin, W.Liu. Structural and Biochemical Characterization of A Multidomain Alginate Lyase Reveals A Novel Role of CBM32 in Cazymes Biochim. Biophys. Acta V.1862 1862 2018.
ISSN: ISSN 0006-3002
PubMed: 29864445
DOI: 10.1016/J.BBAGEN.2018.05.024